FIGURE 3.

Protein sequence alignment of the plastid 30S ribosomal protein S2 encoded by rps2 genes. Àll species are sorted by phylogenetic tree: the first evolutionary line of Allium is blue, the second is green, the third is red and the remaining species are black. Species sequenced by our group are marked with *. (A) Shows Agapanthoideae and Amaryllidoideae subfamily species; (B) shows Nothoscordum bivalve as an outgroup for Allium genus; (C) shows the first evolutionary line Allium species; (D)—the second and (E)—the third. Non-conserved AA positions are highlighted as letters and conserved as dots. The whole AA sequence is shown as a normalized alignment logo below. Possible frameshifts are shown as ! and stop codons as *. Damaged sequences are highlighted in peach color in case of frameshift and in purple in case of stop codon. Colored sequences may be assumed to be a pseudogene.