| bodyid |
A unique identifier for a single hemibrain neuron |
| pre |
The number of presynapses (outputs) a neuron contains, each of these is polyadic |
| post |
The number of postsynapses (inputs) to the neuron |
| upstream |
The number of incoming connections to a neuron |
| downstream |
The number of outgoing connections from a neuron |
| voxels |
Neuron size in voxels |
| soma |
Whether the neuron has a soma in the hemibrain volume |
| name |
The name of this neuron, as read from neuPrint |
| side |
Which brain hemisphere contains the neuron’s soma |
| connectivity.type |
A subset of neurons within a cell type that share similar connectivity, a connectivity type is distinguished from a cell type by an ending _letter unless there is only one connectivity type for the cell type, defined using CBLAST (Scheffer et al., 2020) |
| cell.type |
Neurons of a shared morphology that take the same cell body fibre tract and come from the same hemilineage (Bates et al., 2019) |
| class |
The greater anatomical group to which a neuron belongs, see Figure 1
|
| cellBodyFiber |
The cell body fibre for a neuron, as read from neuPrint (Scheffer et al., 2020) |
| ItoLee_Hemilineage |
The hemilineage that we reckon this cell type belongs to, based on expert review of light-level data from the K. Ito and T. Lee groups (Yu et al., 2013; Ito et al., 2013) |
| Hartenstein_Hemilineage |
The hemilineage that we reckon this cell type belongs to, based on expert review of light-level data from the V. Hartenstein group (Wong et al., 2013; Lovick et al., 2013) |
| putative.classic.transmitter |
Putative neurotransmitter based on what neurons in the hemilineage in question have been shown to express, out of acetylcholine, GABA and/or glutamate |
| putative.other.transmitter |
Potential second neurotransmitter |
| FAFB.match |
The ID of the manual match from the FAFB data set, ID indicates a neuron reconstructed in FAFBv14 CATMAID, many of these neurons will be available through Virtual Fly Brain, https://v2.virtualflybrain.org/
|
| FAFB.match.quality |
The matcher makers’ qualitative assessment of how good this match is: a poor match could be a neuron from a very similar cell type or a highly untraced neuron that may be the correct cell type; an okay match should be a neuron that looks to be from the same morphological cell type but there may be some discrepancies in its arbour; a good match is a neuron that corresponds well between FAFB and the hemibrain data |
| layer |
Probabilistic mean path length to neuron from ALRNs, depends on connection strengths |
| layer.ct |
The mean layer for cell type, rounded to the nearest whole number |
| axon.outputs |
Number of outgoing connections from the neuron’s predicted axon |
| dend.outputs |
Number of outgoing connections from the neuron’s predicted dendrite |
| axon.inputs |
Number of incoming connections from the neuron’s predicted axon |
| dend.inputs |
Number of incoming connections from the neuron’s predicted dendrite |
| total.length |
Total cable length of the neuron in micrometres |
| axon.length |
Total axon cable length of the neuron in micrometres |
| dend.length |
Total dendrite cable length of the neuron in micrometres |
| pd.length |
Total cable length of the primary dendrite ’linker’ between axon and dendrite |
| segregation_index |
A quantification of how polarised a neuron is, in terms of its segregation of inputs onto its predicted dendrite and outputs onto its axon, where 0 is no-polarisation and 1 is totally polarised (Schneider-Mizell et al., 2016) |
| notes |
Other notes from annotators |
