KEY RESOURCES TABLE
| REAGENT or RESOURCE | SOURCE | IDENTIFIER |
|---|---|---|
| Antibodies | ||
| Anti-NeuN Antibody (rabbit) | Sigma-Aldrich | Cat# ABN78 |
| Chemicals, peptides, and recombinant proteins | ||
| DiI (1,1’-Dioctadecyl-3,3,3’,3’-tetramethylindocarbocyanine perchlorate) | Sigma-Aldrich | CAS# 41085-99-8 |
| Streptavidin, Alexa 647 conjugate | ThermoFisher | Cat# S21374 |
| Deposited data | ||
| Raw and analyzed data | This paper | https://dx.doi.org/10.5281/zenodo.4743837 |
| Experimental models: Organisms/strains | ||
| Mouse, C57BL/6J, bred at Columbia University from Jackson lines | The Jackson Laboratory | Stock# 000664 |
| Software and algorithms | ||
| ImageJ | Schneider et al., 2012 | https://imagej.nih.gov/ij/ |
| ImageJ plugin: TrakEM2 | Cardona et al., 2012 | https://imagej.net/TrakEM2 |
| Matlab | MathWorks | https://www.mathworks.com/products/matlab.html |
| Matlab toolbox: Image Acquisition Toolbox | MathWorks | https://www.mathworks.com/products/image-acquisition.html |
| Python | https://www.python.org/ | https://www.python.org/ |
| Python package: ipython | Perez and Granger, 2007 | http://ipython.org/ |
| Python package: pandas | McKinney, 2010 | https://pandas.pydata.org/ |
| Python package: numpy | Van Der Walt et al., 2011 | https://numpy.org/ |
| Python package: scipy | Virtanen et al., 2020 | https://www.scipy.org/ |
| Python package: scikit-learn | Pedregosa et al., 2011 | https://scikit-learn.org |
| Python package: scikit-image | Van Der Walt et al., 2014 | https://scikit-image.org/ |
| Python package: statsmodels | Seabold et al., 2010 | https://www.statsmodels.org |
| Python package: pyglmnet | Jas et al., 2020 | https://github.com/glm-tools/pyglmnet |
| Python package: matplotlib | Hunter, 2007 | https://matplotlib.org/ |
| Python package: pose-tensorflow (forked) | Insafutdinov et al., 2016 | https://github.com/cxrodgers/PoseTF |