Table 2.

The top ten up- and down-regulated genes of differential expression analysis.

Transcript	Annotation	Log2FC	FDR*	Transcript	Annotation	Log2FC	FDR
Larvae versus adults (control)
contig_121728	ShkT	11.69	0.00	contig_38067	CILP1	− 12.69	0.00
contig_122231	APOD	11.62	0.00	contig_995	HMCN1	− 12.56	0.00
contig_25299	DRK	9.95	0.00	contig_938	VIT6	− 12.04	0.00
contig_37708	GHF71	9.87	0.00	contig_775	THYG	− 11.61	0.00
contig_944	PPIA	9.56	0.00	contig_3	Amine oxidase	− 11.52	0.00
contig_87606	CBPA1	9.21	0.00	contig_5742	VKT1	− 11.51	0.00
contig_8969	GDIR1	9.14	0.00	contig_1453	AGRB1	− 11.38	0.00
contig_88814	NOTC1	9.02	0.00	contig_276	F5/8TCP	− 11.31	0.00
contig_121973	JAG1A	8.91	0.00	contig_1381	PIF	− 11.23	0.00
contig_122091	NOTC3	8.17	0.00	contig_1999	BMPH	− 11.18	0.00
PLTI versus EAL (control)
contig_134018	CYP 450 3A24	6.48	0.00	contig_27408	NR1D1	− 6.85	0.00
contig_82481	COEA1	6.03	0.00	contig_112201	METTL27	− 6.81	0.00
contig_111772	FAT2	5.78	0.00	contig_114466	ALPL	− 6.35	0.00
contig_49126	DLL1	5.38	0.00	contig_22998	ADAT1	− 4.89	0.00
contig_124622	NNMT	5.20	0.00	contig_36302	Her9	− 4.84	0.00
contig_122297	TRPM8	5.06	0.00	contig_82796	THB	− 4.67	0.00
contig_82597	ZAN	5.04	0.00	contig_57569	HES1	− 4.37	0.00
contig_60913	LOTGIDRAFT_174331	4.72	0.00	contig_18774	ARRH	− 4.16	0.00
contig_74887	TMEM8A	4.16	0.00	contig_8396	PRI1	− 4.14	0.00
contig_85773	DYH1	4.11	0.00	contig_94926	SLC39A4	− 4.07	0.00
PLTIII versus EAL (control)
contig_7950	Sulfotransfer	2.94	3E−11	contig_75954	PAP17	− 3.46	0.00
contig_42211	PLB1	2.30	6E−10	contig_25226	APEX1	− 1.82	3E−08
contig_76672	Lipasa_GDSL	2.35	5E−10	contig_36302	Her9	− 2.52	2E−07
contig_397	Desaturase	2.04	9E−09	contig_8369	PRI1	− 1.62	3E−06
contig_73820	COMP	1.75	6E−08	contig_35950	DPOLB	− 1.59	5E−06
contig_122231	APOD	2.19	3E−08	contig_43699	LOC106173161	− 1.63	3E−06
contig_13435	CGI_10019207	2.00	5E−07	contig_57569	HES1	− 2.44	3E−06
contig_99037	CES2	2.29	5E−07	contig_53940	ASNS	− 1.62	6E−05
contig_46413	CCF1	1.77	5E−07	contig_51986	I206_04028	− 1.81	3E−05
contig_29812	PKD1	2.34	6E−06	contig_84733	CEL2A	− 2.32	1E−05
FTI versus FTIII (control)
contig_90	C1QT6	3.84	6E−09	contig_112532	Deoxyrribonucleasa	− 9.46	0.00
contig_8142	DHX33	4.86	9E−08	contig_9082	Tetraspanin	− 9.36	0.00
contig_4708	RRBP1	5.34	2E−07	contig_7012	SLC3	− 9.34	0.00
contig_10208	VP13D	3.65	6E−07	contig_12667	GGT1	− 6.88	0.00
contig_34256	IFI44L	4.22	8E−07	contig_177	PZP	− 5.94	0.00
contig_19648	ADRO	4.82	1E−06	contig_27382	RR_TM4-6	− 8.95	7E−13
contig_34428	GRID1	8.18	2E−06	contig_164419	ITB7	− 8.98	1E−12
contig_14667	hexosyltransferase	3.16	3E−06	contig_128776	LORF2	− 5.11	1E−08
contig_9006	AT133	2.67	8E−06	contig_39099	GGT	− 5.17	4E−08
contig_4285	KLH38	4.56	2E−05	Contig_2882	SPARC	− 6.79	8E−08

*FDR = 0.00 indicates values of 1E−16 or lower.