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. Author manuscript; available in PMC: 2022 Apr 1.
Published in final edited form as: Proteins. 2020 Dec 11;89(4):436–449. doi: 10.1002/prot.26030

FIGURE 3.

FIGURE 3

Adjusting the repulsive weighting scheme produces lower energy design models. Average Rosetta energies per residue (Rosetta Energy Units, more negative is favorable) for FastDesign runs performed with different values assigned to the hyperparameters floor and lambda. The top table is from the RC monomer design benchmark set and the bottom table is from the RC two-sided interface design benchmark. Results for the legacy FastDesign protocol (floor = 0, lambda = 0) are shown in the top left portion of the table. The individual cells are colored such that the least favorable values for each table are red and the most favorable values are green