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. Author manuscript; available in PMC: 2022 Apr 1.
Published in final edited form as: Proteins. 2020 Dec 11;89(4):436–449. doi: 10.1002/prot.26030

TABLE 1.

The repulsive ramping scheme used by legacy FastDesign and our new parameterized set of weights, MonomerDesign2019

Round 1a 1b 2a 2b 3a 3b 4a 4b
Legacy 0.02 0.02 0.25 0.25 0.55 0.55 1.00 1.00
MonomerDesign2019 0.06 0.09 0.28 0.32 0.57 0.63 1.00 1.00

Note: Side chain optimization steps (ie, “Packing”) are labeled with an “a,” minimization steps (gradient-based minimization of backbone and side chain torsion angles) are labeled with a “b.” Each step is annotated with the relative repulsive weight for that round, where a value of 1.0 is equal to the weight used for the default Rosetta score function (ref2015).20