Table 2.
Bisulfite sequencing read-alignment software programs 1.
| Aligner | Index Method | URL |
|---|---|---|
| BSMAP | Wild-card | https://code.google.com/archive/p/bsmap/ |
| RMAPBS | Wild-card | https://github.com/smithlabcode/rmap |
| Bismark | Three-letter | https://github.com/FelixKrueger/Bismark |
| BS-Seeker | Three-letter | version1: https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-11-203 version2: https://github.com/BSSeeker/BSseeker2 version3: https://github.com/khuang28jhu/bs3/ |
| BitmapperBS | Three-letter | https://github.com/chhylp123/BitMapperBS |
1 This table is based on the table of another review paper (Bock C., 2012) [82] and has been modified to include the well-known programs that fit the scope of this paper.