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. 2021 Jul 23;12:4485. doi: 10.1038/s41467-021-24515-9

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© The Author(s) 2021

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 5 — Comparison between the reference coverage of the Flye and Canu assemblies and their strain-separated counterparts generated by Strainberry (ssFlye and ssCanu, respectively) for the following references and datasets: a L. helveticus NWC_2_3 reference and PacBio dataset; b L. delbrueckii NWC_2_2 reference and PacBio dataset; c L. helveticus NWC_2_3 reference and ONT dataset; d L. helveticus NWC_2_3 reference and ONT dataset. Orange regions highlight a higher coverage of the strain-separated assembly (ssFlye or ssCanu), blue regions highlight a higher coverage of the strain-oblivious assembly (Flye or Canu), and gray regions represent the common coverage level shared by both assemblies.