Table 2.
Original Publication | Signature | Biomarkers Incorporated in the Signature | Clinical Significance | |
---|---|---|---|---|
Filipits et al. (2011) [44] |
EndoPredict | Low risk-associated (surrogates for ER signalling/cell differentiation): RBBP8, IL6ST, AZGP1, MGP, STC2 |
|
|
High risk-associated (surrogates for proliferation/cell cycle): BIRC5, UBE2C, DHCR7 | ||||
Housekeeper genes: CALM2, OAZ1, RPL37A | ||||
Control gene: HBB | ||||
EPclin | Clinical factors: Lymph node status, tumour size | |||
Molecular factors: EndoPredict genes | ||||
LR-associated:IL6ST (5 probes), NPY1R, ELOVL5, ASAH1 (2 probes), ALDH6A1, SYBU, RAB5C, PTP4A2, HSPA2, SLC7A8 ADRA2A, MYCBP, CX3CR1, ERCC1, DNAJA3, NINJ1, C4orf43, IFI35, ZNF688, SNX1, CREBL2, HPN, NME3, PDHB, NKX3-1, DEXI, GSTM3, LCMT1 | ||||
Sota et al. (2014) [49] |
IRSN-23 | Non-pCR-associated: IL6ST (3 probes), CX3CR1, ZEB1 (2 probes), SEMA3C, HFE, EDA |
|
|
pCR-associated: CARD9, IDO1, CXCL9, PNP, CXCL11 (2 probes), CEBPB, CD83, CD1D, CTSC, CXCL10, IGHG1, VEGFA, CR2 | ||||
Turnbull et al. (2016) [51] |
EER4 | Pretreatment levels: IL6ST, NGFRAP1 |
|
|
2-week levels: ASPM, MCM4 | ||||
EA2 | Pretreatment levels: IL6ST |
|
||
2-week levels: MCM4 | ||||
EA2clin | Clinical factors | Lymph node involvement, tumour size and tumour grade |
|
|
Molecular factors | Pretreament level: IL6ST 2-week level: MCM4 |
|||
Tsunashima et al. (2018) [54] |
42GC | NLR-associated: KLF7, STS, RALA, SMURF2, OXTR, ABCC10, ASAP2, CALB2, OPA1 |
|
|
LR-associated: IL6ST (5 probes), NPY1R, ELOVL5, ASAH1 (2 probes), ALDH6A1, SYBU, RAB5C, PTP4A2, HSPA2, SLC7A8 ADRA2A, MYCBP, CX3CR1, ERCC1, DNAJA3, NINJ1, C4orf43, IFI35, ZNF688, SNX1, CREBL2, HPN, NME3, PDHB, NKX3-1, DEXI, GSTM3, LCMT1 |
42GC, 42-gene classifier; AI, aromatase inhibitor; BC, breast cancer; BCSS, BC-specific survival; EA2, EndoAdjuvant 2; EA2clin, EndoAdjuvant 2 clinical; EER4, Edinburgh EndoResponse 4; ER, oestrogen receptor; HER2, human epidermal growth factor receptor 2; EA2, EndoAdjuvant2; EA2clin, EndoAdjuvant2 clinical; ET, endocrine therapy; IRSN-23, immune-related 23-gene signature for NAC; NAC, neoadjuvant chemotherapy; pCR, pathological complete response; RFS, recurrence-free survival.