AD	Alzheimer’s disease
APP/PS1	Amyloid Precursor Protein swe/ Presenilin 1 dE9
Aβ	Amyloid-β
BP	Biological Process
CC	Cellular Component
Cscores	Confidence scores
DDA	Data-Dependent acquisition
DEA	Differential Expression Analysis
DIA	Data-independent acquisition
EWCE	Expression-Weighted Cell-type Enrichment
HPLC	High-Performance Liquid Chromatography
LC-MS/MS	Liquid Chromatography–Tandem Mass Spectrometry
Moa	Months of age
MS-DAP	Mass Spectrometry Downstream Analysis Pipeline
SWATH	Sequential Window Acquisition of all THeoretical fragment-ion
SynGO	Synaptic Gene Ontology
WP	WikiPathways