ANN	Artificial neural network
ATAC-seq	Assay for transposase-accessible chromatin using sequencing
auROC	Area under the receiver operating characteristic
BRNN	Bidirectional recurrent neural networks
ChIA-PET	Chromatin interaction analysis with paired-end tag
ChIP	Chromatin immuno precipitation
CNN	Convolutional neural network
CRM	cis-regulatory module
CSI-ANN	Chromatin signature identification by artificial neural network
DECRES	Deep learning for identifying cis-regulatory elements
ECNN	Ensemble of CNN
ENCODE	Encyclopedia of DNA elements
FAIRE	Formaldehyde-assisted isolation of regulatory elements
FANTOM	Functional annotation of the mammalian genome
Gkm-SVM	Gapped kmer support vector machine
HMM	Hidden Markov model
Kmer-SVM	kmer-support vector machine
ML	Machine learning
REDfly	Regulatory element database for Drosophila
RF	Random forest
RFECS	Random forest-based enhancer identification using chromatin states
ROC	Receiver operating characteristic
scATAC-seq	Single cell assay for transposase-accessible chromatin using sequencing
SCRMshaw	Supervised cis-regulatory module discovery
STARR-seq	Self-transcribing active regulatory region sequencing
SVM	Support vector machine
TF	Transcription factor
TFBS	Transcription factor binding site