GWAS |
Genome-wide association studies |
LD |
Linkage disequilibrium |
SNPs |
Single nucleotide polymorphisms |
INDELs |
Insertion/deletion polymorphisms |
ENCODE |
Encyclopedia of DNA Elements |
TFs |
Transcription factors |
TSSs |
Transcription start sites |
CTCF |
CCCTC-binding factor |
TADs |
Topologically associated domains |
NPCs |
Neural progenitor cells |
FAC/NS |
Fluorescence assisted cell/nuclei sorting |
RNAPII |
RNA polymerases II |
DHSs |
DNase I hypersensitive sites |
DNase-seq |
DNase I hypersensitive sites sequencing |
MNase-seq |
Micrococcal nuclease digestion of chromatin followed by sequencing |
FAIRE-seq |
Formaldehyde-assisted isolation of regulatory elements with sequencing |
ATAC-seq |
Assay for transposase-accessible chromatin coupled to sequencing |
ChIP-seq |
Chromatin immunoprecipitation with sequencing |
CUT&RUN |
Cleavage under targets and release using nuclease |
DamID |
DNA adenine methyltransferase (DAM)-identification |
ChIA-PET |
Chromatin interaction analysis by paired-end tag sequencing |
PLAC-seq |
Proximity ligation-assisted ChIP-Seq |