Table 3.
Gene blocks identified as high (LP08) and low (LP21) GSL parents with the DH lines.
| ♀ | HGSL Line | LGSL Lines | ♂ | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Chrom | Start | Stop | Name | Gene ID V1.5 | Gene ID V3.0 | Stages | LP08 | DH 005 |
DH 014 |
DH 016 |
DH 017 |
DH 026 |
DH 009 |
DH 059 |
DH 061 |
LP21 |
| A03 | 21326869 | 21328218 | MYB28.1 | Bra012961 | BraA03g044440.3C | Transcription factors—Aliphatic | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP21 | LP21 | LP21 | LP21 |
| A09 | 3469113 | 3470483 | MYB28.2 | Bra035929 | BraA09g007000.3C | LP08 | LP21 | LP08 | LP08 | LP08 | LP08 | LP21 | LP21 | LP08 | LP21 | |
| A02 | 25403875 | 25405492 | MYB28.3 | Bra029311 | BraA02g043310.3C | LP08 | LP08 | LP21 | LP21 | LP21 | LP21 | LP08 | LP21 | LP21 | LP21 | |
| A03 | 1364309 | 1365719 | MYB29.1 | Bra005949 | BraA03g003070.3C | LP08 | LP08 | LP08 | LP21 | LP21 | LP08 | LP21 | LP21 | LP08 | LP21 | |
| A09 | 3356433 | 3357581 | MYB34.1 | Bra035954 | BraA09g006760.3C | Transcription factors—Indolic | LP08 | LP21 | LP08 | LP08 | LP08 | LP08 | LP21 | LP21 | LP08 | LP21 |
| A03 | 21129279 | 21130669 | MYB34.2 | Bra013000 | BraA03g043850.3C | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP21 | LP21 | LP21 | LP21 | |
| A02 | 25183826 | 25184998 | MYB34.3 | Bra029349 | BraA02g042890.3C | LP08 | LP08 | LP21 | LP21 | LP21 | LP21 | LP08 | LP21 | LP21 | LP21 | |
| A02 | 25172906 | 25179858 | MYB34.4 | Bra029350 | BraA02g042880.3C | LP08 | LP08 | LP21 | LP21 | LP21 | LP21 | LP08 | LP21 | LP21 | LP21 | |
| A08 | 18248352 | 18249890 | MYB51.2 | Bra016553 | BraA08g028300.3C | LP08 | LP21 | LP08 | LP08 | LP08 | LP08 | LP08 | LP21 | LP21 | LP21 | |
| A06 | 6841688 | 6842966 | MYB51.3 | Bra025666 | BraA06g013940.3C | LP08 | LP21 | LP21 | LP08 | LP08 | LP21 | LP08 | LP08 | LP21 | LP21 | |
| A07 | 23411313 | 23412768 | MYB122.1 | Bra015939 | BraA07g037950.3C | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP21 | |
| A02 | 12327349 | 12329278 | MYB122.2 | Bra008131 | BraA02g022140.3C | LP08 | LP08 | LP21 | LP21 | LP21 | LP21 | LP08 | LP21 | LP08 | LP21 | |
| A03 | 18302919 | 18305368 | BCAT-4 | Bra001761 | BraA03g039030.3C | Side chain elongation | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP21 | LP21 | LP21 | LP21 |
| A05 | 18305152 | 18307632 | BCAT-4 | Bra022448 | BraA05g027600.3C | LP08 | LP21 | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP21 | |
| A06 | 8849237 | 8851230 | BCAT-3 | Bra017964 | BraA06g017190.3C | LP08 | LP21 | LP21 | LP08 | LP08 | LP21 | LP08 | LP08 | LP21 | LP21 | |
| A01 | 14814889 | 14817183 | BCAT-3 | Bra029966 | BraA01g023550.3C | LP08 | LP21 | LP21 | LP21 | LP21 | LP21 | LP21 | LP21 | LP21 | LP21 | |
| A02 | 2391691 | 2393547 | IPMDH1 | Bra023450 | BraA02g005400.3C | LP08 | LP21 | LP21 | LP21 | LP21 | LP21 | LP08 | LP21 | LP08 | LP21 | |
| A03 | 21085392 | 21093219 | MAM1 | Bra013007 | BraA03g043770.3C | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP21 | LP21 | LP21 | LP21 | |
| A03 | 21061112 | 21065885 | MAM3 | Bra013009 | BraA03g043760.3C | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP21 | LP21 | LP21 | LP21 | |
| A03 | 21054537 | 21056963 | MAM3 | Bra013011 | BraA03g043750.3C | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP21 | LP21 | LP21 | LP21 | |
| A02 | 15934744 | 15944413 | MAM1 | Bra018524 | LP08 | LP08 | LP21 | LP21 | LP21 | LP21 | LP08 | LP21 | LP21 | LP21 | ||
| A02 | 25115507 | 25119702 | MAM1 | Bra029355 | BraA02g042820.3C | LP08 | LP08 | LP21 | LP21 | LP21 | LP21 | LP08 | LP21 | LP21 | LP21 | |
| A02 | 25103449 | 25106649 | MAM3 | Bra029356 | BraA02g042810.3C | LP08 | LP08 | LP21 | LP21 | LP21 | LP21 | LP08 | LP21 | LP21 | LP21 | |
| A04 | 5653874 | 5657118 | IPMI LSU1 | Bra032708 | BraA04g008730.3C | LP08 | LP21 | LP21 | LP21 | LP21 | LP21 | LP21 | LP21 | LP21 | LP21 | |
| A08 | 5964064 | 5967370 | IPMI LSU1 | Bra040341 | BraA08g006340.3C | LP08 | LP21 | LP21 | LP08 | LP08 | LP21 | LP08 | LP21 | LP21 | LP21 | |
| A05 | 1608381 | 1609157 | IPMI SSU2 | Bra004744 | BraA05g003360.3C | LP08 | LP21 | LP21 | LP08 | LP08 | LP21 | LP21 | LP08 | LP21 | LP21 | |
| A03 | 12943140 | 12945015 | BAT5 | Bra000760 | BraA03g027810.3C | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP21 | LP21 | LP21 | LP21 | |
| A09 | 17204468 | 17206516 | BAT5 | Bra029434 | BraA09g026220.3C | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP21 | LP21 | |
| A06 | 6007926 | 6010112 | CYP79F1 | Bra026058 | BraA06g012170.3C | Core structure synthesis—Aliphatic | LP08 | LP21 | LP21 | LP08 | LP08 | LP21 | LP08 | LP08 | LP21 | LP21 |
| A04 | 5460393 | 5462018 | CYP83A1 | Bra032734 | BraA04g008410.3C | LP08 | LP21 | LP21 | LP21 | LP21 | LP21 | LP21 | LP21 | LP21 | LP21 | |
| A02 | 768271 | 770517 | CYP79A2–Aromatic | Bra028764 | BraA02g001710.3C | LP08 | LP21 | LP21 | LP21 | LP21 | LP21 | LP08 | LP21 | LP08 | LP21 | |
| A05 | 24811698 | 24812553 | GSTF11 | Bra032010 | BraA05g041750.3C | LP08 | LP21 | LP08 | LP08 | LP08 | LP08 | LP08 | LP21 | LP08 | LP21 | |
| A07 | 17498418 | 17499341 | GSTU20 | Bra003645 | BraA07g026570.3C | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP21 | |
| A01 | 3359620 | 3360837 | GGP1 | Bra011201 | BraA01g007200.3C | LP08 | LP21 | LP21 | LP21 | LP21 | LP21 | LP21 | LP21 | LP08 | LP21 | |
| A03 | 27901998 | 27903448 | GGP1 | Bra024068 | BraA03g029390.3C | LP08 | LP08 | LP08 | LP21 | LP21 | LP08 | LP21 | LP21 | LP21 | LP21 | |
| A08 | 12833451 | 12834884 | GGP1 | Bra010282 | LP08 | LP21 | LP21 | LP08 | LP08 | LP21 | LP08 | LP21 | LP21 | LP21 | ||
| A08 | 12835830 | 12837549 | GGP1 | Bra010283 | BraA08g017720.3C | LP08 | LP21 | LP21 | LP08 | LP08 | LP21 | LP08 | LP21 | LP21 | LP21 | |
| A09 | 5949618 | 5952361 | SUR1 | Bra036703 | BraA09g011980.3C | LP08 | LP21 | LP08 | LP08 | LP08 | LP08 | LP08 | LP21 | LP08 | LP21 | |
| A09 | 25123658 | 25125223 | UGT74B1 | Bra024634 | BraA09g038870.3C | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP21 | LP21 | |
| A01 | 16964878 | 16965828 | ST5b | Bra031476 | BraA01g028650.3C | LP08 | LP21 | LP21 | LP21 | LP21 | LP21 | LP21 | LP21 | LP21 | LP21 | |
| A07 | 18479546 | 18480592 | ST5b | Bra003817 | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP21 | ||
| A07 | 18481748 | 18482782 | ST5b | Bra003818 | BraA07g028360.3C | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP21 | |
| A07 | 18002729 | 18003723 | ST5b | Bra003726 | BraA07g027400.3C | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP21 | |
| A07 | 23419048 | 23420082 | ST5b | Bra015938 | BraA07g037960.3C | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP21 | |
| A07 | 23426595 | 23427635 | ST5b | Bra015936 | BraA07g037980.3C | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP21 | |
| A09 | 7726767 | 7727825 | ST5b | Bra027623 | BraA09g012830.3C | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP21 | |
| A09 | 9019311 | 9020375 | ST5b | Bra027117 | BraA09g016490.3C | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP21 | |
| A09 | 9021641 | 9022747 | ST5b | Bra027118 | BraA09g016500.3C | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP21 | |
| A09 | 9977892 | 9978911 | ST5b | Bra027880 | BraA09g017830.3C | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP21 | LP21 | |
| A06 | 6850053 | 6851066 | ST5c | Bra025668 | BraA06g013960.3C | LP08 | LP21 | LP21 | LP08 | LP08 | LP21 | LP08 | LP08 | LP21 | LP21 | |
| A01 | 374137 | 375874 | CYP79B2 | Bra011821 | BraA01g000840.3C | Core structure synthesis—Indolic | LP08 | LP21 | LP08 | LP08 | LP08 | LP08 | LP21 | LP21 | LP08 | LP21 |
| A03 | 31203169 | 31205210 | CYP79B2 | Bra017871 | BraA03g061480.3C | LP08 | LP08 | LP08 | LP21 | LP21 | LP08 | LP21 | LP21 | LP21 | LP21 | |
| A08 | 14973444 | 14975600 | CYP79B2 | Bra010644 | BraA08g021670.3C | LP08 | LP21 | LP08 | LP08 | LP08 | LP08 | LP08 | LP21 | LP21 | LP21 | |
| A08 | 5058097 | 5059748 | CYP83B1 | Bra034941 | BraA08g007380.3C | LP08 | LP21 | LP21 | LP08 | LP08 | LP21 | LP08 | LP21 | LP21 | LP21 | |
| A03 | 7230400 | 7231268 | GSTF9 | Bra022815 | BraA03g016240.3C | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP21 | LP21 | LP08 | LP21 | |
| A04 | 13901442 | 13902299 | GSTF9 | Bra021673 | BraA04g022220.3C | LP08 | LP21 | LP08 | LP21 | LP21 | LP08 | LP21 | LP21 | LP21 | LP21 | |
| A03 | 7232844 | 7233982 | GSTF10 | Bra022816 | BraA03g016250.3C | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP21 | LP21 | LP08 | LP21 | |
| A02 | 12337180 | 12338199 | ST5a | Bra008132 | BraA02g022150.3C | LP08 | LP08 | LP21 | LP21 | LP21 | LP21 | LP08 | LP21 | LP08 | LP21 | |
| A07 | 23427909 | 23428469 | ST5a | Bra015935 | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP21 | ||
| A08 | 19203810 | 19205763 | FMOGS-OX5 | Bra016787 | BraA08g030720.3C | Side chain modification—Aliphatic | LP08 | LP21 | LP08 | LP08 | LP08 | LP08 | LP08 | LP21 | LP21 | LP21 |
| A09 | 8217824 | 8219479 | FMOGS-OX2 | Bra027035 | BraA09g015600.3C | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP21 | |
| A02 | 15973741 | 15976278 | AOP2 | Bra018521 | BraA02g027430.3C | LP08 | LP08 | LP21 | LP21 | LP21 | LP21 | LP08 | LP21 | LP21 | LP21 | |
| A03 | 13492936 | 13494533 | AOP1 | Bra000847 | BraA03g028760.3C | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP21 | LP21 | LP21 | LP21 | |
| A03 | 13498815 | 13503183 | AOP2 | Bra000848 | BraA03g028770.3C | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP21 | LP21 | LP21 | LP21 | |
| A09 | 1170626 | 1172022 | AOP1 | Bra034182 | BraA09g001250.3C | LP08 | LP21 | LP08 | LP08 | LP08 | LP08 | LP21 | LP21 | LP08 | LP21 | |
| A09 | 1168503 | 1169786 | AOP1 | Bra034181 | BraA09g001260.3C | LP08 | LP21 | LP08 | LP08 | LP08 | LP08 | LP21 | LP21 | LP08 | LP21 | |
| A09 | 1165028 | 1166807 | AOP2 | Bra034180 | LP08 | LP21 | LP08 | LP08 | LP08 | LP08 | LP21 | LP21 | LP08 | LP21 | ||
| A03 | 7768293 | 7769612 | GSL-OH | Bra022920 | BraA03g017350.3C | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP21 | LP21 | LP08 | LP21 | |
| A04 | 13852551 | 13853809 | GSL-OH | Bra021670 | BraA04g022180.3C | LP08 | LP21 | LP08 | LP21 | LP21 | LP08 | LP21 | LP21 | LP21 | LP21 | |
| A04 | 13877397 | 13878646 | GSL-OH | Bra021671 | BraA04g022190.3C | LP08 | LP21 | LP08 | LP21 | LP21 | LP08 | LP21 | LP21 | LP21 | LP21 | |
| A02 | 5846392 | 5848174 | CYP81F2 | Bra020459 | BraA02g012540.3C | Side chain modification—Indolic | LP08 | LP08 | LP21 | LP21 | LP21 | LP21 | LP08 | LP21 | LP08 | LP21 |
| A03 | 5233924 | 5236233 | CYP81F2 | Bra006830 | BraA03g012390.3C | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP21 | LP21 | LP08 | LP21 | |
| A03 | 20376817 | 20378290 | APK1 | Bra013120 | BraA03g042630.3C | LP08 | LP08 | LP08 | LP08 | LP08 | LP08 | LP21 | LP21 | LP21 | LP21 | |
| A01 | 361733 | 363288 | APK2 | Bra011822 | BraA01g000800.3C | Sulphur supplementation | LP08 | LP21 | LP08 | LP08 | LP08 | LP08 | LP21 | LP21 | LP08 | LP21 |
| A03 | 31218969 | 31220359 | APK2 | Bra017872 | BraA03g061500.3C | LP08 | LP08 | LP08 | LP21 | LP21 | LP08 | LP21 | LP21 | LP21 | LP21 | |
| A08 | 14980248 | 14981406 | APK2 | Bra010645 | BraA08g021680.3C | LP08 | LP21 | LP08 | LP08 | LP08 | LP08 | LP08 | LP21 | LP21 | LP21 | |
Bold letters are indicated when all HGSL lines had the LP08 genotypes whereas LGSL lines had the LP21 genotypes. Pink (LP08) and sky-blue (LP21).