Abbreviation	Full Name of Term
AMR	antimicrobial resistance
CDI	Clostridioides difficile infection
CRISPR	clustered regularly interspersed short palindromic repeat
CTn	conjugative transposon
DNA	deoxyribonucleic acid
ECE	extra-chromosomal element
GTP	guanosine triphosphate
ICE	integrative and conjugative elements
IS	insertion sequence
MGE	mobile genetic element
MLSB	macrolide-lincosamide and streptogramin B
MTn	multi-purpose transposon
PCR	polymerase chain reaction
PMN	polymorphonuclear neutrophils
RNA	ribonucleic acid
Tn	transposon
TndX	conjugative transposon site-specific recombinase
WGS	whole-genome sequencing