Table 1.
Information regarding whole genome sequencing data of sixteen C. acnes strains.
| Strain | GenBank | Source | Joint Site | Phylotype | SLST | Size (bp) | Coverage | Contigs | N50 (bp) | Plasmid | Geographical Origin |
|---|---|---|---|---|---|---|---|---|---|---|---|
| ZH7 | JAGDNT000000000 | Relapse PJI | Hip | IB | H1 | 2,544,272 | 203 | 17 | 323,469 | - | Zürich, Switzerland |
| P8 | JAGDNS000000000 | Relapse PJI | Shoulder | IB | H1 | 2,545,631 | 169 | 19 | 168,849 | - | Paris, France |
| P15 | JAGDNR000000000 | Relapse PJI | Hip | IB | H1 | 2,544,110 | 193 | 16 | 572,713 | - | Paris, France |
| P31 | JAGDNQ000000000 | Relapse PJI | Shoulder | IA | F4 | 2,482,181 | 171 | 14 | 690,112 | - | Paris, France |
| S2 | JAGDNP000000000 | Relapse PJI | Hip | IB | H1 | 2,545,388 | 183 | 19 | 337,942 | - | Santander, Spain |
| HOL1 | JAGDNO000000000 | Relapse PJI | Shoulder | IA | D1 | 2,535,867 | 178 | 16 | 738,597 | - | Groningen, Netherlands |
| 261 | JAGDNN000000000 | PJI | Shoulder | IB | H1 | 2,604,163 | 133 | 25 | 323,553 | 54.2 | Madrid, Spain |
| ZH8 | JAGDNM000000000 | PJI | Hip | IA | C1 | 2,526,283 | 187 | 20 | 302,006 | 46.1 | Zürich, Switzerland |
| S3 | JAGDNL000000000 | PJI | Shoulder | II | Knew | 2,478,438 | 207 | 9 | 725,650 | - | Santander, Spain |
| P38 | JAGDNK000000000 | PJI | Shoulder | II | K1 | 2,459,078 | 135 | 12 | 523,312 | - | Paris, France |
| ESL8 | JAGDNJ000000000 | PJI | Knee | IA | A1 | 2,579,590 | 133 | 22 | 400,190 | 54.0 | Ankaran, Slovenia |
| N5 | JAGDNI000000000 | PJI | Shoulder | IA | A1 | 2,478,335 | 168 | 14 | 344,049 | - | Nantes, France |
| HS14 | JAGDNH000000000 | Skin | - | IA | D1 | 2,536,118 | 187 | 10 | 738,783 | - | Madrid, Spain |
| HS18 | JAGDNG000000000 | Skin | - | IA | D1 | 2,535,241 | 213 | 14 | 700,603 | - | Madrid, Spain |
| HS29 | JAGDNF000000000 | Skin | - | IA | F4 | 2,543,557 | 160 | 24 | 280,277 | 52.6 | Madrid, Spain |
| HS50 | JAGDNE000000000 | Skin | - | IA | A1 | 2,479,007 | 163 | 10 | 738,366 | - | Madrid, Spain |