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. 2021 Jul 13;19(7):391. doi: 10.3390/md19070391

Table 1.

Calculated binding affinities (in kcal/mol), 2D chemical structures and binding features for darunavir and the top five most promising cembranoid diterpenes against SARS-CoV-2 main protease (Mpro) a.

Compound Name (Number) Genus 2D Chemical Structure Docking Score (kcal/mol) Binding Features b
Darunavir --- graphic file with name marinedrugs-19-00391-i001.jpg −8.2 LEU167 (1.96 Å),
GLU166 (1.94, 2.88 Å)
Sarelengan B (363) S. elegans graphic file with name marinedrugs-19-00391-i002.jpg −9.8 GLY143 (2.39 Å),
GLU166 (1.94 Å),
GLN189 (2.58 Å),
THR190 (2.33 Å)
Bislatumlide A (340) S. latum graphic file with name marinedrugs-19-00391-i003.jpg −9.6 GLY143 (1.88 Å),
GLU166 (2.68 Å)
Dioxanyalolide (347) S. elegans graphic file with name marinedrugs-19-00391-i004.jpg −9.5 GLU166 (2.07 Å)
Desacetylnyalolide (345) S. elegans graphic file with name marinedrugs-19-00391-i005.jpg −9.1 GLU166 (1.66, 2.12 Å),
THR190 (2.42 Å)
Lobophytone W (357) S. elegans graphic file with name marinedrugs-19-00391-i006.jpg −8.7 HIS41 (2.01 Å),
CYS145 (2.34 Å),
GLU166 (2.35, 2.86 Å)

a The potent Sarcophyton cembranoid diterpenes metabolites were selected based on latter MM-GBSA binding energy calculations. b Only hydrogen bonds (in Å) were displayed.