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. 2021 Jun 23;14(7):607. doi: 10.3390/ph14070607

Table 7.

Gut microbiome (NGS).

Phylum Class Family Genus Control DMF MB RSV
Abditibacteriota Abditibacteriaceae Abditibacteriaceae Abditibacterium 0.001 ± 0.000 0.000 ± 0.000 0.000 ± 0.000 0.000 ± 0.000
Actinobacteriota Actinobacteria Propionibacteriaceae Cutibacterium 0.022 ± 0.022 0.001 ± 0.000 0.001 ± 0.000 0.001 ± 0.000
Bifidobacteriaceae Bifidobacterium 0.005 ± 0.001 0.004 ± 0.003 0.003 ± 0.001 0.013 ± 0.007
Corynebacteriaceae Corynebacterium 0.002 ± 0.000 0.000 ± 0.000 0.001 ± 0.000 0.001 ± 0.000
Coriobacteriia Atopobiaceae Olsenella 0.000 ± 0.000 0.000 ± 0.000 0.001 ± 0.000 0.001 ± 0.000
Proteobacteria Alphaproteobacteria Rhizobiales Methylobacterium-Methylorubrum 0.005 ± 0.005 0.000 ± 0.000 0.000 ± 0.000 0.000 ± 0.000
Caulobacterales Asticcacaulis 0.002 ± 0.000 0.000 ± 0.000 0.000 ± 0.000 0.000 ± 0.000
Gammaproteobacteria Burkholderiales Parasutterella 0.085 ± 0.025 0.082 ± 0.055 0.054 ± 0.013 0.088 ± 0.021
Burkholderia-Caballeronia-Paraburkholderia 0.006 ± 0.000 0.000 ± 0.000 0.000 ± 0.000 0.000 ± 0.000
Enterobacteriaceae Escherichia-Shigella 0.002 ± 0.002 0.000 ± 0.000 0.000 ± 0.000 0.001 ± 0.000
Xanthomonadaceae Pseudoxanthomonas 0.004 ± 0.000 0.000 ± 0.000 0.000 ± 0.000 0.001 ± 0.000
Moraxellaceae Acinetobacter 0.001 ± 0.000 0.000 ± 0.000 0.000 ± 0.000 0.001 ± 0.000
Rhodanobacteraceae Rudaea 0.001 ± 0.000 0.000 ± 0.000 0.000 ± 0.000 0.000 ± 0.000
Bacteroidota Bacteroidia Prevotellaceae Prevotella 0.135 ± 0.031 0.135 ± 0.058 0.096 ± 0.018 0.160 ± 0.027
Prevotellaceae UCG-001 0.023 ± 0.005 0.031 ± 0.014 0.014 ± 0.004 0.032 ± 0.008
Prevotellaceae Ga6A1 group 0.029 ± 0.008 0.015 ± 0.009 0.030 ± 0.011 0.023 ± 0.010
Alloprevotella 0.022 ± 0.007 0.022 ± 0.021 0.010 ± 0.002 0.012 ± 0.003
Marinifilaceae Odoribacter 0.026 ± 0.006 0.028 ± 0.013 0.014 ± 0.004 0.025 ± 0.004
Bacteroidaceae Bacteroides 0.074 ± 0.025 0.027 ± 0.009 0.018 ± 0.003 0.029 ± 0.004
Muribaculaceae Muribaculum 0.033 ± 0.006 0.020 ± 0.010 0.017 ± 0.004 0.038 ± 0.013
Tannerellaceae Parabacteroides 0.008 ± 0.002 0.005 ± 0.003 0.004 ± 0.001 0.005 ± 0.001
Rikenellaceae Rikenella 0.006 ± 0.001 0.006 ± 0.004 0.007 ± 0.001 0.006 ± 0.001
Alistipes 0.025 ± 0.005 0.019 ± 0.011 0.011 ± 0.003 0.023 ± 0.006
Rikenellaceae RC9 gut group 0.035 ± 0.004 0.052 ± 0.029 0.050 ± 0.027 0.067 ± 0.025
Campilobacterota Campylobacteria Helicobacteraceae Helicobacter 0.038 ± 0.007 0.095 ± 0.070 0.058 ± 0.021 0.050 ± 0.007
Firmicutes Clostridia Lachnospiraceae Lachnospiraceae UCG-001 0.080 ± 0.025 0.037 ± 0.017 0.147 ± 0.062 0.034 ± 0.014
Herbinix 0.014 ± 0.004 0.012 ± 0.016 0.021 ± 0.015 0.007 ± 0.001
[Ruminococcus] gnavus group 0.013 ± 0.002 0.029 ± 0.022 0.023 ± 0.008 0.016 ± 0.005
Acetatifactor 0.006 ± 0.001 0.010 ± 0.014 0.034 ± 0.019 0.031 ± 0.012
Stomatobaculum 0.002 ± 0.001 0.004 ± 0.002 0.003 ± 0.001 0.008 ±0.003
Lachnospiraceae NK4A136 group 0.027 ± 0.005 0.031 ± 0.020 0.036 ± 0.006 0.052 ± 0.011
Tuzzerella 0.004 ± 0.001 0.006 ± 0.006 0.002 ± 0.000 0.002 ± 0.001
Tyzzerella 0.003 ± 0.001 0.003 ± 0.000 0.001 ± 0.000 0.001 ± 0.000
Roseburia 0.008 ± 0.006 0.003 ± 0.002 0.003 ± 0.001 0.007 ± 0.004
GCA-900066575 0.003 ± 0.001 0.002 ± 0.001 0.001 ± 0.000 0.002 ± 0.001
ASF356 0.002 ± 0.000 0.002 ± 0.002 0.002 ± 0.000 0.001 ± 0.000
Blautia 0.001 ± 0.000 0.002 ± 0.002 0.001 ± 0.000 0.001 ± 0.001
[Eubacterium] hallii group 0.001 ± 0.000 0.002 ± 0.001 0.001 ± 0.000 0.001 ± 0.000
A2 0.002 ± 0.000 0.002 ± 0.001 0.004 ± 0.001 0.002 ± 0.001
Lachnospiraceae UCG-003 0.001 ± 0.000 0.001 ± 0.000 0.003 ± 0.001 0.001 ± 0.000
[Eubacterium] xylanophilum group 0.003 ± 0.002 0.003 ± 0.002 0.002 ± 0.000 0.003 ± 0.001
[Eubacterium] fissicatena group 0.002 ± 0.000 0.002 ± 0.001 0.003 ± 0.001 0.002 ± 0.000
Mobilitalea 0.001 ± 0.000 0.003 ± 0.001 0.001 ± 0.000 0.001 ± 0.000
Lachnoanaerobaculum 0.004 ± 0.001 0.007 ± 0.006 0.005 ± 0.002 0.007 ± 0.001
Oscillospiraceae Oscillibacter 0.014 ± 0.003 0.018 ± 0.013 0.007 ± 0.001 0.011 ± 0.001
Colidextribacter 0.024 ± 0.005 0.030 ± 0.012 0.016 ± 0.001 0.029 ± 0.002
UCG-003 0.004 ± 0.001 0.009 ± 0.005 0.003 ± 0.001 0.007 ± 0.001
Flavonifractor 0.003 ± 0.001 0.003 ± 0.002 0.002 ± 0.000 0.003 ± 0.001
UCG-002 0.002 ± 0.001 0.002 ± 0.001 0.000 ± 0.000 0.001 ± 0.000
Intestinimonas 0.009 ± 0.002 0.010 ± 0.007 0.006 ± 0.001 0.009 ± 0.002
Ruminococcaceae Ruminococcus 0.018 ± 0.004 0.019 ± 0.015 0.013 ± 0.004 0.011 ± 0.005
Incertae Sedis 0.000 ± 0.001 0.003 ± 0.002 0.004 ± 0.001 0.003 ± 0.002
Negativibacillus 0.004 ± 0.001 0.002 ± 0.001 0.002 ± 0.000 0.003 ± 0.001
Angelakisella 0.002 ± 0.001 0.003 ± 0.001 0.001 ± 0.000 0.001 ± 0.000
Paludicola 0.002 ± 0.000 0.001 ± 0.000 0.001 ± 0.000 0.001 ± 0.000
Anaerotruncus 0.004 ± 0.001 0.004 ± 0.002 0.004 ± 0.001 0.001 ± 0.000
[Eubacterium] siraeum group 0.003 ± 0.001 0.002 ± 0.001 0.002 ± 0.001 0.008 ± 0.004
Clostridiaceae Clostridium sensu stricto 1 0.001 ± 0.000 0.002 ± 0.001 0.003 ± 0.001 0.001 ± 0.000
Anaerovoracaceae [Eubacterium] nodatum group 0.002 ± 0.001 0.002 ± 0.001 0.001 ± 0.000 0.001 ± 0.000
Family XIII UCG-001 0.001 ± 0.000 0.003 ± 0.001 0.001 ± 0.000 0.001 ± 0.000
Monoglobaceae Monoglobus 0.001 ± 0.000 0.001 ± 0.000 0.003 ± 0.002 0.002 ± 0.002
Christensenellaceae Christensenellaceae R-7 group 0.001 ± 0.000 0.001 ± 0.001 0.001 ± 0.000 0.001 ± 0.000
Peptococcaceae Peptococcus 0.000 ± 0.000 0.000 ± 0.000 0.001 ± 0.001 0.000 ± 0.000
Bacilli Erysipelotrichaceae Allobaculum 0.077 ± 0.020 0.070 ± 0.069 0.200 ± 0.079 0.067 ± 0.017
Ileibacterium 0.017 ± 0.006 0.019 ± 0.030 0.011 ± 0.004 0.038 ± 0.016
Dubosiella 0.003 ± 0.002 0.004 ± 0.002 0.004 ± 0.002 0.007 ± 0.002
Faecalibaculum 0.001 ± 0.000 0.004 ± 0.003 0.001 ± 0.000 0.002 ± 0.001
Lactobacillaceae Lactobacillus 0.012 ± 0.005 0.008 ± 0.002 0.015 ± 0.003 0.008 ± 0.003
Atopostipes 0.001 ± 0.000 0.001 ± 0.000 0.001 ± 0.000 0.001 ± 0.000
Streptococcaceae Streptococcus 0.004 ± 0.003 0.001 ± 0.000 0.001 ± 0.000 0.003 ± 0.001
Acholeplasmataceae Anaeroplasma 0.001 ± 0.000 0.002 ± 0.003 0.003 ± 0.003 0.001 ± 0.000
Staphylococcaceae Staphylococcus 0.002 ± 0.002 0.000 ± 0.000 0.000± 0.000 0.000 ± 0.000
Jeotgalicoccus 0.001 ± 0.000 0.000 ± 0.000 0.003 ± 0.002 0.001 ± 0.000
Exiguobacteraceae Exiguobacterium 0.004 ± 0.000 0.000 ± 0.000 0.000 ± 0.000 0.000 ± 0.000
Erysipelatoclostridiaceae Candidatus Stoquefichus 0.001 ± 0.000 0.001 ± 0.000 0.001 ± 0.000 0.004 ± 0.003
Erysipelatoclostridium 0.001 ± 0.000 0.000 ± 0.000 0.000 ± 0.000 0.001 ± 0.000
Streptococcaceae Lactococcus 0.001 ± 0.001 0.000 ± 0.000 0.000 ± 0.000 0.002 ± 0.001
Mycoplasmataceae Ureaplasma 0.000 ± 0.000 0.002 ± 0.002 0.001 ± 0.000 0.002 ± 0.001
Mycoplasma 0.002 ± 0.000 0.001± 0.000 0.000 ± 0.000 0.001 ± 0.000
Negativicutes Acidaminococcaceae Phascolarctobacterium 0.034 ± 0.021 0.019 ± 0.035 0.002 ± 0.001 0.001 ± 0.000
Sporomusaceae Pelosinus 0.001 ± 0.000 0.000 ± 0.000 0.000 ± 0.000 0.000 ± 0.000
Deferribacterota Deferribacteres Deferribacteraceae Mucispirillum 0.010 ± 0.003 0.038 ± 0.052 0.014 ± 0.011 0.006 ± 0.001
Desulfobacterota Desulfovibrionia Desulfovibrionaceae Desulfovibrio 0.001 ± 0.000 0.002 ± 0.002 0.001 ± 0.001 0.001 ± 0.000
Bilophila 0.001 ± 0.000 0.002 ± 0.001 0.001 ± 0.000 0.001 ± 0.000
Spirochaetota Leptospirae Leptospiraceae Leptospira 0.002 ± 0.000 0.000 ± 0.000 0.000 ± 0.000 0.000 ± 0.000
Brachyspirae Brachyspiraceae Brachyspira 0.004 ± 0.001 0.025 ± 0.040 0.004 ± 0.003 0.002 ± 0.001
Patescibacteria Saccharimonadia Saccharimonadaceae Candidatus Saccharimonas 0.005 ± 0.001 0.008 ± 0.005 0.003 ± 0.001 0.008 ± 0.001
Verrucomicrobiota Verrucomicrobiae Akkermansiaceae Akkermansia 0.012 ± 0.006 0.009 ± 0.013 0.010 ± 0.006 0.023 ± 0.014