Table 3.
Estimates Simple sequence repeats (SSRs) identified in the P. mugo, P. rotundata, P. uncinata and P. sylvestris chloroplast genomes.
| Taxon | ID | Type | Repeat Motif | Length (bp) | Start | End | Location | ID | Type | Repeat Motif | Length (bp) | Start | End | Location |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| P. mugo | 1 | p1 | (C)12 | 12 | 15142 | 15153 | IGS | 11 | p1 | (A)11 | 11 | 79749 | 79759 | IGS |
| 2 | p1 | (A)12 | 12 | 26050 | 26061 | IGS | 12 | p1 | (T)10 | 10 | 87077 | 87086 | IGS | |
| 3 | c | (A)10(G)10 | 20 | 30198 | 30217 | IGS | 13 | p1 | (A)10 | 10 | 100605 | 100614 | IGS | |
| 4 | p1 | (T)23 | 23 | 40994 | 41016 | IGS | 14 | p1 | (T)10 | 10 | 103575 | 103584 | IGS | |
| 5 | p1 | (T)13 | 13 | 44949 | 44961 | IGS | 15 | p1 | (G)11 | 11 | 104142 | 104152 | CDS (ndhD) | |
| 6 | p1 | (T)10 | 10 | 48132 | 48141 | IGS | 16 | p1 | (A)13 | 13 | 106928 | 106940 | IGS | |
| 7 | p1 | (A)10 | 10 | 54429 | 54438 | IGS | 17 | p1 | (T)11 | 11 | 107335 | 107345 | CDS (rpl32) | |
| 8 | p1 | (A)10 | 10 | 67826 | 67835 | IGS | 18 | p1 | (A)10 | 10 | 109379 | 109388 | IGS | |
| 9 | p1 | (T)11 | 11 | 71751 | 71761 | CDS (ycf3) | 19 | p1 | (A)10 | 10 | 109840 | 109849 | CDS (rps12) | |
| 10 | p2 | (AT)6 | 12 | 73254 | 73265 | IGS | 20 | p2 | (AT)6 | 12 | 111752 | 111763 | IGS | |
| 1 | p1 | (C)13 | 13 | 15141 | 15153 | IGS | 11 | p1 | (T)11 | 11 | 87069 | 87079 | IGS | |
| 2 | p1 | (A)12 | 12 | 26050 | 26061 | IGS | 12 | p1 | (A)10 | 10 | 100597 | 100606 | IGS | |
| P. rotundata | 3 | c | (A)11(G)10 | 21 | 30197 | 30217 | IGS | 13 | p1 | (T)10 | 10 | 100883 | 100892 | IGS |
| 4 | p1 | (T)15 | 15 | 40993 | 41007 | IGS | 14 | p1 | (T)10 | 10 | 103568 | 103577 | IGS | |
| 5 | p1 | (T)15 | 15 | 44940 | 44954 | IGS | 15 | p1 | (G)10 | 10 | 104135 | 104144 | CDS (ndhD) | |
| 6 | p1 | (T)11 | 11 | 48122 | 48132 | IGS | 16 | p1 | (A)13 | 13 | 106920 | 106932 | IGS | |
| 7 | p1 | (A)10 | 10 | 67816 | 67825 | IGS | 17 | p1 | (T)11 | 11 | 107327 | 107337 | CDS (rpl32) | |
| 8 | p1 | (T)12 | 12 | 71741 | 71752 | CDS (ycf3) | 18 | p1 | (A)10 | 10 | 109375 | 109384 | IGS | |
| 9 | p2 | (AT)6 | 12 | 73245 | 73256 | IGS | 19 | p1 | (A)10 | 10 | 109836 | 109845 | CDS (rps12) | |
| 10 | p1 | (A)11 | 11 | 79740 | 79750 | IGS | 20 | p2 | (AT)6 | 12 | 111746 | 111757 | IGS | |
| 1 | p1 | (C)13 | 13 | 15142 | 15154 | IGS | 11 | p1 | (T)11 | 11 | 87091 | 87101 | IGS | |
| 2 | p1 | (A)15 | 15 | 26051 | 26065 | IGS | 12 | p1 | (A)10 | 10 | 100620 | 100629 | IGS | |
| 3 | c | (A)11(G)10 | 21 | 30203 | 30223 | IGS | 13 | p1 | (T)10 | 10 | 103590 | 103599 | IGS | |
| 4 | p1 | (T)23 | 23 | 40998 | 41020 | IGS | 14 | p1 | (G)10 | 10 | 104157 | 104166 | CDS (ndhD) | |
| P. uncinata | 5 | p1 | (T)11 | 11 | 48131 | 48141 | IGS | 15 | p1 | (A)13 | 13 | 106942 | 106954 | IGS |
| 6 | p1 | (A)10 | 10 | 54428 | 54437 | IGS | 16 | p1 | (T)11 | 11 | 107349 | 107359 | CDS (rpl32) | |
| 7 | p1 | (A)10 | 10 | 67836 | 67845 | IGS | 17 | p1 | (A)11 | 11 | 109393 | 109403 | IGS | |
| 8 | p1 | (T)13 | 13 | 71760 | 71772 | CDS (ycf3) | 18 | p1 | (A)11 | 11 | 109855 | 109865 | CDS (rps12) | |
| 9 | p2 | (AT)6 | 12 | 73265 | 73276 | IGS | 19 | p2 | (AT)6 | 12 | 111767 | 111778 | IGS | |
| 10 | p1 | (A)12 | 12 | 79761 | 79772 | IGS | ||||||||
| 1 | p1 | (T)11 | 11 | 1376 | 1386 | IGS | 12 | p1 | (A)10 | 10 | 79947 | 79956 | IGS | |
| 2 | p1 | (A)10 | 10 | 9837 | 9846 | IGS | 13 | p1 | (T)10 | 10 | 87277 | 87286 | IGS | |
| 3 | c | (C)10(T)11 | 21 | 15195 | 15215 | IGS | 14 | p1 | (A)10 | 10 | 100844 | 100853 | IGS | |
| 4 | p1 | (A)12 | 12 | 26112 | 26123 | IGS | 15 | p1 | (T)11 | 11 | 101130 | 101140 | IGS | |
| P. sylvestris | 5 | c | (A)11(G)10 | 21 | 30269 | 30289 | IGS | 16 | p1 | (T)10 | 10 | 101833 | 101842 | CDS (ndhH) |
| 6 | p1 | (T)11 | 11 | 41059 | 41069 | IGS | 17 | p1 | (T)10 | 10 | 102658 | 102667 | IGS | |
| 7 | p1 | (T)19 | 19 | 45043 | 45061 | IGS | 18 | p1 | (G)11 | 11 | 104388 | 104398 | CDS (ndhD) | |
| 8 | p1 | (A)12 | 12 | 68030 | 68041 | IGS | 19 | p1 | (T)11 | 11 | 107567 | 107577 | CDS (rpl32) | |
| 9 | p1 | (T)14 | 14 | 71957 | 71970 | CDS (ycf3) | 20 | p1 | (A)10 | 10 | 109610 | 109619 | IGS | |
| 10 | p2 | (AT)6 | 12 | 73462 | 73473 | IGS | 21 | p1 | (A)12 | 12 | 110071 | 110082 | CDS (rps12) | |
| 11 | p2 | (AT)6 | 12 | 79134 | 79145 | IGS | 22 | p2 | (AT)7 | 14 | 111984 | 111997 | IGS |
c, compound SSR; p1, mono-nucleotide SSR; p2, di-nucleotide SSR.