Table 4.
K-mer estimations of genome size (Mbp) utilizing raw (R) and quality processed (P) sequencing data for Reseda lutea and Reseda pentagyna.
| Reseda lutea | |||||||
| Genome Estimation Software | K21 | K31 | K41 |
Average
Processed data (SD) |
|||
| R | P | R | P | R | P | ||
| General Formula | 845 | 851 | 860 | 868 | 876 | 884 | 867.7 (16.5) |
| FindGSE | 864 | 876 | 972 | 988 | 1077 | 1078 | 980.7 (101.2) |
| Covest-Repeat | 826 | 772 | 885 | 958 | 1123 | 1209 | 979.67 (219.3) |
| Kmergenie | 391 | 401 | 471 | 483 | 542 | 559 | 447.7 (132.6) |
| GenomeScope V1 | 584 | 591 | 652 | 665 | 788 | 796 | 684 (103.8) |
| Reseda pentagyna | |||||||
| Genome Estimation Software | K21 | K31 | K41 |
Average
Processed data (SD) |
|||
| R | P | R | P | R | P | ||
| General Formula | 871 | 880 | 874 | 882 | 931 | 927 | 896.3 (26.6) |
| FindGSE | 768 | 781 | 825 | 848 | 935 | 971 | 866.7 (96.4) |
| Covest-Repeat | 817 | 825 | 1010 | 1067 | 1249 | 1318 | 1070 (246.51) |
| Kmergenie | 484 | 486 | 582 | 591 | 611 | 614 | 552.3 (66.4) |
| GenomeScope V1 | 515 | 524 | 602 | 619 | 723 | 748 | 630.3 (112.4) |
(K21) (K31) (K41) k-mer sizes; (SD) Standard Deviation.