Fig. 9.

Comparison of Nanopore reads to STRONG prediction for COG0532 from Bin_72. Non-metric multidimensional scaling of Nanopore reads that mapped to COG0532 from Bin_72 of the anaerobic digester time series (red) together with the three haplotypes reconstructed from short reads by STRONG (black 0, 1 and 2). Haplotypes 0 and 2 were identical for COG0532. Distances were calculated as fractional Hamming distances (see text) on short read variant positions (see “Methods - Nanopore sequence analysis” section). Blue dashed lines indicate read density contours