Table 1. Top 12 overlapping Genomic features and amino-acid changes obtained with the PFI and SHAP methods.
(* Amino acid position in ORF1ab polyprotein is provided).
| Genomic position | Gene name | Protein name | Amino Acid |
|---|---|---|---|
| 313 | ORF1ab | Nonstructural protein NSP1 | 16L* |
| 1059 | ORF1ab | Nonstructural protein NSP2 | 265T* |
| 3037 | ORF1ab | Nonstructural protein NSP3 | 924F* |
| 6866 | ORF1ab | Nonstructural protein NSP3 | 2201N* |
| 11083 | ORF1ab | Nonstructural protein NSP6 | 3606L* |
| 15324 | ORF1ab | Nonstructural protein NSP12 | 5020N* |
| 23403 | S | Spike glycoprotein | 614D |
| 25563 | ORF3a | Nonstructural protein NS3a | 57Q |
| 28144 | ORF8 | Nonstructural protein NS8 | 84L |
| 28833 | N | Nucleocapsid protein | 187S |
| 28881 | N | Nucleocapsid protein | 203R |
| 28883 | N | Nucleocapsid protein | 204G |