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Comparison of each typing method.
| Method | No. of types | Simpson’s ID (95% CI) | Concordance with WGS | Adjusted Rand index | |||
|---|---|---|---|---|---|---|---|
| MLST | IR | PFGE | WGS | ||||
| MLST | 9 | 0.735 (0.507–0.963) | 52.90% | – | – | – | – |
| IR | 13 | 0.963 (0.919–1.000) | 92.90% | 0.192 | – | – | – |
| PFGE | 14 | 0.978 (0.951–1.000) | 100% | 0.118 | 0.743 | – | – |
| WGS | 14 | 0.978 (0.951–1.000) | – | 0.118 | 0.743 | 1 | – |
