TABLE 1.
Description of the 22 sequenced libraries in this study: country of origin, host species, year of collection, sample stage, sequencing technology, and number of reads aligned against Ostreid herpesvirus 1 (OsHV-1) reference genome (Accession number: NC_005881.2).
| Sample’s ID | Country of origin | Species | Year | Stage | Sequencer, sequencing protocol, platform | Aligned reads |
| VIV46-2-m | France | Crassostrea gigas | 2017 | Juvenile | HiSeq 4000, Paired-end 150 bp, LIGAN-PM Genomics | 281,336 |
| VIV56-10-m | France | Crassostrea gigas | 2017 | Juvenile | HiSeq 4000, Paired-end 150 bp, LIGAN-PM Genomics | 346,491 |
| VIV48-4-m | France | Crassostrea gigas | 2017 | Juvenile | HiSeq 4000, Paired-end 150 bp, LIGAN-PM Genomics | 354836 |
| VIV49-5-m88 | France | Crassostrea gigas | 2017 | Juvenile | HiSeq 4000, Paired-end 150 bp, LIGAN-PM Genomics | 183,665 |
| VIV58-12-m | France | Crassostrea gigas | 2017 | Juvenile | HiSeq 4000, Paired-end 150 bp, LIGAN-PM Genomics | 155,976 |
| VIV47-3-m | France | Crassostrea gigas | 2017 | Juvenile | HiSeq 4000, Paired-end 150 bp, LIGAN-PM Genomics | 370,770 |
| VIV57-11-m99 | France | Crassostrea gigas | 2017 | Juvenile | HiSeq 4000, Paired-end 150 bp, LIGAN-PM Genomics | 49,985 |
| Poole-Harbour United Kingdom | United-Kingdom | Crassostrea gigas | 2015 | na | MiSeq, Paired-end 150 bp | 55,056 |
| LI | France | Crassostrea gigas | 2010 | Pool of larvae | HiSeq 2500, Paired-end 100 bp, GenoToul | 400,021 |
| PR | France | Crassostrea gigas | 2008 | Pool of juveniles | HiSeq 2500, Single-end 100 bp, GATC Biotech | 344,852 |
| MV | France | Crassostrea gigas | 2010 | Ripe Adult | HiSeq 2500, Single-end 100 bp, GATC Biotech | 331,278 |
| NZ | New-Zealand | Crassostrea gigas | 2010 | Pool of larvae | HiSeq 2500, Single-end 100 bp, GATC Biotech | 341256 |
| NZ16 | New-Zealand | Crassostrea gigas | 2011 | Adult | HiSeq 2500, Paired-end 100 bp, GATC Biotech | 105,610 |
| NZ17 | New-Zealand | Crassostrea gigas | 2011 | Adult | HiSeq 2500, Paired-end 100 bp, GenoToul | 202,246 |
| NZ18 | New-Zealand | Crassostrea gigas | 2011 | Adult | HiSeq 2500, Paired-end 100 bp, GenoToul | 150,315 |
| IRL15* | Ireland | Crassostrea gigas | 2011 | Adult | HiSeq 2500, Paired-end 100 bp, GenoToul | 1,802 |
| JP2* | Japan | Crassostrea gigas | na | Adult | HiSeq 2500, Paired-end 100 bp, GenoToul | 2,115 |
| JP6* | Japan | Crassostrea gigas | na | Adult | HiSeq 2500, Paired-end 100 bp, GenoToul | 3,280 |
| NL4* | Netherlands | Crassostrea gigas | na | Adult | HiSeq 2500, Paired-end 100 bp, GenoToul | 4,143 |
| SP16* | Spain | Crassostrea gigas | na | Adult | HiSeq 2500, Paired-end 100 bp, GenoToul | 1,259 |
| SW3* | Sweden | Ostrea edulis | 2012 | Pool of larvae | HiSeq 2500, Paired-end 100 bp, GenoToul | 1,839 |
| SW6 | Sweden | Ostrea edulis | 2012 | Adult | HiSeq 2500, Paired-end 100 bp, GenoToul | 402,082 |
Samples for which the ID starts by “VIV” are from research project Vivaldi and the remaining samples are from historical collections. *Those samples did not pass the quality check and were discarded.