Table 4.
Probability values for Guo and Thompson Hardy-Weinberg equilibrium (HWE) tests in the UPHD populations.
| Maximum allelic resolutiona | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Population | HLA-A | HLA-C | HLA-B | HLA-DRB1 | HLA-DRB3/4/5 | HLA-DQA1 | HLA-DQB1 | HLA-DPA1 | HLA-DPB1 |
| European American | 0.0036 | 0.0001 | 0.0000 | 0.0001 | 0.0000 | 0.0067 | 0.0014 | 0.0000 | 0.0000 |
| African American | 0.3967 | 0.0458 | 0.0004 | 0.0002 | 0.0045 | 0.0002 | 0.0010 | 0.0457 | 0.1030 |
| USA Hispanic | 0.0034 | 0.0011 | 0.0977 | 0.1916 | 0.0107 | 0.2181 | 0.0879 | 0.0227 | 0.0331 |
| Mexican | 0.2713 | 0.0491 | 0.0629 | 0.2286 | 0.0806 | 0.0375 | 0.0183 | 0.2912 | 0.1346 |
| Spanish | 0.5230 | 0.9906 | 0.1151 | 0.8920 | 0.5300 | 0.3015 | 0.7955 | 0.0129 | 0.9012 |
| Italian | 0.8447 | 0.0985 | 0.8679 | 0.2448 | NT | NT | 0.1224 | NT | 0.0025 |
| Greek | 0.4691 | 0.5181 | 0.7447 | 0.3585 | NT | 0.1268 | 0.2305 | NT | 0.1233 |
| Arab | 0.0007 | 0.1866 | 0.1187 | 0.2123 | 0.5325 | 0.1640 | 0.1951 | 0.3769 | 0.4846 |
| European | 0.9083 | 0.2381 | 0.0852 | 0.0075 | 0.0082 | 0.0012 | 0.0068 | 3.0E-05 | 0.1332 |
| API | 0.0005 | 6.0E-05 | 0.0000 | 0.0003 | 0.0009 | 0.0001 | 0.0226 | 0.1848 | 0.2367 |
| Thai | 0.8839 | 0.0970 | 0.3526 | 0.2229 | NT | NT | 0.2942 | NT | 0.7104 |
| India | 0.2216 | 0.8316 | 0.2299 | 0.4482 | NT | 0.4661 | 0.1402 | 0.0219 | 0.0197 |
| 2-Field allele resolutionb | |||||||||
| Population | HLA-A | HLA-C | H LA-B | HLA-DRB1 | HLA-DRB3/4/5 | HLA-DQA1 | HLA-DQB1 | HLA-DPA1 | HLA-DPB1 |
| European American | 0.0024 | 0.0053 | 2.0E-05 | 0.0001 | 0.0005 | 0.1575 | 0.0027 | 0.0007 | 0.0000 |
| African American | 0.5170 | 0.0446 | 0.0004 | 0.0003 | 0.0122 | 0.0969 | 0.0491 | 0.5912 | 0.1328 |
| USA Hispanic | 0.0041 | 0.1008 | 0.0511 | 0.1217 | 0.3845 | 0.1598 | 0.2138 | 0.3784 | 0.0249 |
| Mexican | 0.3126 | 0.0598 | 0.0835 | 0.1564 | 0.2390 | 0.0181 | 0.0641 | 0.0713 | 0.5244 |
| Spanish | 0.3135 | 0.9281 | 0.2699 | 0.8588 | 0.2817 | 0.7791 | 0.5180 | 0.1513 | 0.8987 |
| Italian | 0.8016 | 0.2731 | 0.6705 | 0.2305 | NT | NT | 0.2882 | NT | 0.0004 |
| Greek | 0.3984 | 0.8091 | 0.8724 | 0.3815 | NT | 0.3061 | 0.1838 | NT | 0.0579 |
| Arab | 0.0003 | 0.2089 | 0.1479 | 0.1720 | 0.6508 | 0.4250 | 0.1559 | 0.7203 | 0.3533 |
| European | 0.7474 | 0.1366 | 0.1881 | 0.0039 | 0.5274 | 0.0340 | 0.0016 | 0.7028 | 0.1569 |
| API | 0.0005 | 0.0019 | 0.0000 | 0.0004 | 0.0624 | 0.0112 | 0.0430 | 0.5365 | 0.2509 |
| Thai | 0.8633 | 0.0970 | 0.3526 | 0.2229 | NT | NT | 0.2942 | NT | 0.6943 |
| Indian | 0.4011 | 0.5449 | 0.6403 | 0.3584 | NT | 0.5607 | 0.1448 | 1.0000 | 0.0197 |
HLA loci that deviated significantly (P < 0.05) from HWE are shown in boldface type.
HWE test performed on alleles characterized at maximum (3–4-Field) allelic resolution.
HWE test performed on alleles characterized at 2-Field allele resolution.