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. 2021 May 19;59(6):e03125-20. doi: 10.1128/JCM.03125-20

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Copyright © 2021 Hammerl et al.

This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license.

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FIG 1 — Phylogenetic relationship of the Y. pseudotuberculosis isolates. The phylogenetic relationship was calculated with CSI Phylogeny v1.4 using the following parameters: minimum depth at SNP positions = 10×; min. relative depth at SNP positions = 10×; minimum distance between SNPs (prune) = 10 bp; minimum SNP quality = 30; minimum read mapping quality = 25; and a minimal Z-score of 1.96. Heterozygous SNPs were ignored. The presence of virulence-associated DNA regions is indicated by black boxes.