TABLE 3.

Typing and virulence genes of the isolates

Isolate	18-YE00011	18-YE00012	19-YE00056	19-YE00057	19-YE00065	19-YE00066	19-YE00070	19-YE00106
Biotype	1	1	1	1	1	1	1	1
Serotype	O:2b	O:13	O:2b	O:2a	O:1a	O:1a	O:2a	O:1b
MLST type	16	41	16	14	42	42	14	43
cgMLST type	2,877	2,816	2,740	1,035	2,808	2,808	1,047	1,053
Virulence gene sequence identitya,b
Chromosomal
ail	99.63	99.63	99.63	99.63	100	100	99.63	99.63
inv	99.66	99.96	99.66	99.85	99.96	99.96	99.85	100
ypmA	ND	(+)	ND	(+)	(+)	(+)	(+)	(+)
ypmB	(+)	ND	(+)	ND	(+)	(+)	ND	(+)
ypmC	(+)	ND	(+)	ND	ND	ND	ND	ND
pYV
yadA	(+)	(+)	(+)	(+)	(+)	ND	ND	(+)
virF	99.88	99.75	99.88	99.88	99.88	ND	ND	99.63
yopE	99.55	100	99.55	100	99.85	ND	ND	100
yopH	100	100	100	100	99.86	ND	ND	100
yopT	100	99.79	100	100	100	ND	ND	100
yopM	92.96	(+)	(+)	(+)	(+)	ND	ND	(+)
yopO	99.86	99.91	99.86	99.82	99.86	ND	ND	99.95
yopP/J	100	99.88	100	100	100	ND	ND	100
HPI
psn	ND	100	ND	ND	100	100	ND	99.99
irp1	ND	99.97	ND	ND	99.99	99.99	ND	100
irp2	ND	99.97	ND	ND	100	100	ND	99.98
ybtP	ND	99.89	ND	ND	99.94	99.94	ND	99.94
ybtQ	ND	100	ND	ND	100	100	ND	100
ybtA	ND	100	ND	ND	100	100	ND	100
ybtE	ND	99.94	ND	ND	100	100	ND	100
ybtS	ND	100	ND	ND	100	100	ND	100

^aFor sequences that were completely detectable, percentage of the sequence identity to the reference is given.

^bND, not detected; (+), partial sequences identified.