TABLE 4.
Mobile genetic elements (plasmids and prophages) of the isolates
| Isolate | 18-YE00011 | 18-YE00012 | 19-YE00056 | 19-YE00057 | 19-YE00065 | 19-YE00066 | 19-YE00070 | 19-YE00106 |
|---|---|---|---|---|---|---|---|---|
| No. of plasmids | 1 | 3 | 1 | 2 | 1 | 0 | 0 | 2 |
| inc-groupa | IncFII(Y) | IncFII(Y) | IncFII(Y) | IncFII(Y) | IncFII(Y) | ND | ND | IncFII(Y) |
| inc-groupa | ND | ncFII | ND | ncFII | ND | ND | ND | ncFII |
| inc-groupa | ND | [IncFII] | ND | ND | ND | ND | ND | ND |
| No. of prophages (no. of intact prophages) | 5 (2) | 7 (3) | 4 (1) | 8 (2) | 5 (2) | 5 (2) | 2 (1) | 4 (3) |
| Identity of intact prophages | RE_2010, Salmonella (NC_019488); SuMu, Haemophilus (NC_019455) | vB_SosS_Oslo, Salmonella, (NC_018279); SEN1, Salmonella (NC_029003); D108, Escherichia (NC_013594) | ENT90, Erwinia (NC_019932) |
phiES15, Cronobacter (NC_018454); Fels_2, Enterobacteria (NC_010463) | phiES15, Cronobacter (NC_018454); RE_2010, Salmonella (NC_019488) | phiES15, Cronobacter (NC_018454); RE_2010, Salmonella (NC_019488) | RE_2010, Salmonella (NC_019488) | RE_2010, Salmonella (NC_019488); ENT90, Erwinia (NC_019932); vB_MhM_3927A2, Mannheimia (NC_028766) |
a
ND, not detected. Inc replicon types with sequence identities below 100% to the reference sequence are indicated by square brackets.