Table 1.
State-wise details of isolates and their characteristics.
| Sl. No | Isolate ID | Pulso type | OXA Disc | OXA MIC | mecA | SCCmec type | Toxin genes | spa type | ST | CC | ||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| hlg | tsst | pvl | ||||||||||
| 1 | GJ1 | C1 | S | + | − | − | NT | 5407 | 8 | |||
| 2 | GJ2 | C1 | S | − | − | − | t1965 | 5408 | 97 | |||
| 3 | GJ4 | D4 | S | + | − | − | t021 | 5410 | 10 | |||
| 4 | GJ5 | C1 | S | − | − | − | t1965 | 5408 | 97 | |||
| 5 | GJ6 | C1 | S | + | − | − | t3092 | 72 | 8 | |||
| 6 | GJ8 | D4 | S | − | − | − | t021 | 243 | 30 | |||
| 7 | GJ9 | C1 | S | − | − | − | t3092 | 72 | 8 | |||
| 8 | GJ10 | C1 | S | − | − | − | t1965 | 5411 | 97 | |||
| 9 | GJ12 | NT | S | − | − | − | t4522 | 2454 | 9 | |||
| 10 | GJ13 | C1 | S | − | − | − | t4522 | 5411 | 97 | |||
| 11 | GJ14 | C1 | S | − | − | − | t1965 | 5408 | 97 | |||
| 12 | GJ17 | C1 | S | − | − | − | t3092 | 5413 | 8 | |||
| 13 | GJ18 | C1 | S | − | − | − | t1965 | 5414 | 97 | |||
| 14 | GJ22 | NT | S | − | − | − | t1965 | 5413 | 97 | |||
| 15 | GJ23 | C1 | S | − | − | − | t1965 | 4427 | 97 | |||
| 16 | GJ24 | NT | S | − | − | − | NT | 5413 | 8 | |||
| 17 | GJ25 | C1 | S | − | − | − | t1965 | 5414 | 97 | |||
| 18 | GJ26 | NT | S | − | − | − | NT | 5413 | 97 | |||
| 19 | GJ27 | NT | S | − | − | − | NT | 5414 | 97 | |||
| 20 | KA1 | C1 | S | − | − | − | t359 | 2459 | 97 | |||
| 21 | KA4 | C1 | S | + | − | + | t359 | 2459 | 97 | |||
| 22 | KA6 | C1 | S | + | − | − | t359 | 2459 | 97 | |||
| 23 | KA8 | C1 | S | + | − | − | t3992 | 2459 | 97 | |||
| 24 | KA10 | G | R | 32 | + | IVd | + | + | + | t3380 | 2459 | 97 |
| 25 | KA12 | C1 | R | 16 | + | − | − | t4793 | 6 | 5 | ||
| 26 | KA22 | C1 | S | + | − | − | t7287 | 2077 | 1 | |||
| 27 | KA24 | C2 | R | 16 | + | − | − | t359 | 2459 | 97 | ||
| 28 | KA25 | C1 | S | + | − | − | t359 | 2459 | 97 | |||
| 29 | KA26 | C1 | R | 16 | + | + | − | + | t267 | 4992 | 97 | |
| 30 | KA31 | C1 | S | + | − | − | t359 | 2459 | 97 | |||
| 31 | KA38 | C1 | S | + | − | − | t359 | 2459 | 97 | |||
| 32 | KA41 | F1 | S | − | − | − | t7286 | 2454 | 9 | |||
| 33 | KA42 | C1 | S | + | − | − | t359 | 2459 | 97 | |||
| 34 | KA46 | B2 | S | + | − | + | t359 | 2459 | 97 | |||
| 35 | KA48 | C2 | S | 2 | + | IVb | + | − | + | t359 | 2459 | 97 |
| 36 | KA54 | B2 | R | 16 | + | − | + | NT | 2459 | 97 | ||
| 37 | KA55 | NT | R | 32 | + | + | − | + | t359 | 2459 | 97 | |
| 38 | KA56 | C1 | S | + | − | + | t359 | 2458 | 97 | |||
| 39 | KA57 | C1 | S | + | − | + | t359 | 2458 | 97 | |||
| 40 | KA58 | B2 | S | − | − | + | t359 | 2459 | 97 | |||
| 41 | KA59 | C1 | S | + | − | + | t359 | 2459 | 97 | |||
| 42 | KA60 | C1 | R | 32 | + | IVb | − | − | + | t359 | 2459 | 97 |
| 43 | KA62 | C1 | R | 16 | + | + | − | + | t359 | 2459 | 97 | |
| 44 | KA63 | C2 | S | 1 | + | IVb | + | − | + | t267 | 97 | 97 |
| 45 | KA64 | C1 | S | + | − | + | t359 | 2459 | 97 | |||
| 46 | KA66 | C4 | S | + | − | + | t359 | 2459 | 97 | |||
| 47 | KA67 | G | S | + | − | + | t267 | 1687 | 97 | |||
| 48 | KA69 | G | R | > 64 | + | IVd | + | − | + | NT | NT | UA |
| 49 | KA70 | C3 | R | 64 | + | − | + | t267 | 1687 | 97 | ||
| 50 | KA75 | C4 | S | + | − | + | t359 | 2459 | 97 | |||
| 51 | KA76 | G | S | 1 | + | V | + | − | + | NT | 3881 | 1 |
| 52 | KA77 | C3 | S | 1 | + | IVb | + | − | + | t2770 | 2459 | 97 |
| 53 | KA78 | C3 | S | 2 | + | V | + | − | + | t267 | 1687 | 97 |
| 54 | KA80 | C3 | S | + | − | + | t359 | 2459 | 97 | |||
| 55 | KA81 | NT | S | 1 | + | IVb | + | − | − | t359 | 2459 | 97 |
| 56 | KA82 | H | R | 16 | + | + | + | + | t359 | 2459 | 97 | |
| 57 | KA83 | H | R | 16 | + | + | + | + | t359 | 2459 | 97 | |
| 58 | KA84 | I | R | 16 | + | V | + | + | − | t359 | 2459 | 97 |
| 59 | KA85 | NT | S | + | − | + | t359 | 2459 | 97 | |||
| 60 | KA86 | C1 | R | 64 | + | IVb | − | − | + | NT | NT | UA |
| 61 | KA90 | NT | S | 1 | + | IVb | + | + | + | t7683 | 2459 | 97 |
| 62 | KA94 | E8 | R | 32 | + | IVb | + | − | + | t008 | 6 | 5 |
| 63 | KA103 | F1 | S | − | − | − | NT | 2454 | 9 | |||
| 64 | KA107 | E8 | R | 16 | + | IVb | − | − | − | t10760 | 4968 | 8 |
| 65 | KA115 | E7 | S | + | + | − | UA | 2454 | 9 | |||
| 66 | KA119 | F1 | R | 32 | + | + | + | + | UA | 672 | UA | |
| 67 | KA123 | F1 | S | 1 | + | − | − | − | t2297 | 2453 | 97 | |
| 68 | KA124 | E7 | S | + | + | + | t267 | 2453 | 97 | |||
| 69 | KA128 | F1 | R | 32 | + | − | − | + | NT | NT | UA | |
| 70 | KA131 | E6 | S | + | + | + | NT | 2459 | 97 | |||
| 71 | KA132 | E6 | S | + | + | + | t224 | 2459 | 97 | |||
| 72 | KA133 | B2 | S | 1 | + | + | + | + | NT | 1687 | 97 | |
| 73 | KA134 | C5 | S | + | + | + | t4522 | 2454 | 9 | |||
| 74 | KA135 | E2 | R | 16 | + | + | + | t2700 | 2454 | 9 | ||
| 75 | KA140 | NT | S | + | + | + | t7867 | 2454 | 9 | |||
| 76 | KA144 | B1 | S | + | + | + | t4522 | 2454 | 9 | |||
| 77 | KA145 | B1 | S | + | + | + | NT | 2454 | 9 | |||
| 78 | KA148 | E5 | S | + | + | + | t16344 | 2454 | 9 | |||
| 79 | KA149 | NT | S | + | + | + | t7867 | 2454 | 9 | |||
| 80 | KA150 | E5 | S | + | + | + | t16344 | 2454 | 9 | |||
| 81 | KA151 | NT | S | + | + | + | t3841 | 672 | UA | |||
| 82 | KA152 | E5 | S | + | + | + | t3841 | 672 | UA | |||
| 83 | KA154 | NT | S | 1 | + | IVb | + | + | + | t021 | 1482 | 30 |
| 84 | KA155 | E7 | S | + | + | + | t3841 | 672 | UA | |||
| 85 | KA156 | E7 | S | + | + | + | NT | 2454 | 9 | |||
| 86 | KA159 | E7 | S | + | + | + | t359 | 2459 | 97 | |||
| 87 | KA160 | C1 | S | + | − | + | t359 | 2459 | 97 | |||
| 88 | KA161 | C2 | S | + | + | + | t359 | 2459 | 97 | |||
| 89 | KA168 | E3 | S | + | − | + | t7696 | 1687 | 97 | |||
| 90 | KA169 | C3 | R | 64 | + | − | − | + | t359 | 4975 | 9 | |
| 91 | KA170 | C4 | S | + | + | + | t10385 | 580 | UA | |||
| 92 | KA171 | F1 | S | + | + | + | NT | 2454 | 9 | |||
| 93 | KA172 | C4 | S | + | + | − | + | t3841 | 672 | UA | ||
| 94 | KA174 | E3 | S | + | + | + | t4522 | 2454 | 9 | |||
| 95 | KA175 | E7 | R | 16 | + | + | + | t16344 | 2454 | 9 | ||
| 96 | KA176 | E7 | R | 32 | + | + | + | t7867 | 9 | 1 | ||
| 97 | KA177 | F1 | S | + | + | + | t2734 | 1687 | 97 | |||
| 98 | KA180 | E3 | S | + | + | + | t4522 | 2454 | 9 | |||
| 99 | KA181 | E8 | S | − | − | − | t519 | 4976 | 1 | |||
| 100 | KA182 | E7 | S | + | + | + | t3841 | 672 | UA | |||
| 101 | KA184 | E7 | S | + | + | + | NT | 4976 | 1 | |||
| 102 | KA192 | D1 | S | + | + | + | t18471 | 2454 | 9 | |||
| 103 | KA193 | E7 | R | 32 | + | + | + | − | t4522 | 2454 | 9 | |
| 104 | KA194 | A1 | S | − | − | − | t359 | 5360 | 1 | |||
| 105 | KA195 | A3 | S | + | − | − | t 668 | 5 | 5 | |||
| 106 | KA196 | D3 | R | 16 | + | + | + | t002 | 3081 | 5 | ||
| 107 | KA197 | D3 | S | − | − | − | t1236 | 97 | 97 | |||
| 108 | KA198 | E2 | S | − | − | + | t1236 | 97 | 97 | |||
| 109 | KA199 | A1 | S | − | − | + | t7287 | 5098 | 1 | |||
| 110 | KA200 | A1 | R | 32 | + | − | + | t657 | 772 | 1 | ||
| 111 | KA201 | D4 | R | 16 | + | − | + | t7287 | 5098 | 1 | ||
| 112 | KA202 | E2 | S | + | − | + | t5019 | 2459 | 97 | |||
| 113 | KA203 | D1 | S | + | + | + | t7867 | 2459 | 97 | |||
| 114 | KA204 | NT | S | − | − | − | t267 | 2459 | 97 | |||
| 115 | KA205 | NT | S | − | − | + | t18314 | 5418 | 9 | |||
| 116 | KA206 | E6 | S | − | − | + | t3992 | 2459 | 97 | |||
| 117 | KA207 | D2 | S | − | + | + | t3992 | 5689 | 97 | |||
| 118 | MG2 | C4 | S | − | − | − | t7867 | 2454 | 9 | |||
| 119 | MG3 | C4 | S | 1 | + | IVb | + | − | − | t7867 | 2454 | 9 |
| 120 | MG4 | NT | S | − | − | − | t4522 | 5416 | 9 | |||
| 121 | MG5 | C4 | S | 2 | + | IVb | + | − | − | t17680 | 2454 | 9 |
| 122 | MG6 | C4 | S | + | − | − | t7867 | 2454 | 9 | |||
| 123 | MG7 | C4 | R | 32 | + | IVb | − | − | − | t7867 | 2454 | 9 |
| 124 | MG8 | C4 | S | 1 | + | IVb | − | − | − | t1201 | 2459 | 97 |
| 125 | MG9 | NT | S | 1 | + | IVb | − | − | − | t1201 | 2454 | 9 |
| 126 | MG10 | E2 | S | 2 | + | IVb | − | − | − | t4522 | 2454 | 9 |
| 127 | MG11 | C4 | S | − | − | − | t17680 | 2454 | 9 | |||
| 128 | MG15 | E2 | S | − | − | − | t4522 | 2454 | 9 | |||
| 129 | MG16 | E2 | S | − | − | − | t7867 | 2454 | 9 | |||
| 130 | MG19 | E3 | S | 1 | + | IVb | − | − | − | t2700 | 5418 | 9 |
| 131 | MG25 | E2 | S | − | − | − | NT | 5418 | 9 | |||
| 132 | MG31 | E7 | S | − | − | − | t2700 | NT | UA | |||
| 133 | MG32 | NT | R | 32 | − | − | − | t657 | 5419 | 9 | ||
| 134 | MG35 | E2 | S | − | − | − | t4522 | 2454 | 9 | |||
| 135 | MG37 | NT | S | − | − | − | t7867 | 2454 | 9 | |||
| 136 | MG38 | E2 | S | 1 | + | IVb | − | − | − | t4522 | 2454 | 9 |
| 137 | MH4 | A3 | S | + | + | − | t18320 | 2454 | 9 | |||
| 138 | MH11 | A3 | S | − | − | − | t18320 | 2454 | 9 | |||
| 139 | MH16 | A2 | S | 1 | + | IVb | + | + | − | t7867 | 2454 | 9 |
| 140 | MH35 | NT | S | + | + | + | NT | 5113 | 9 | |||
| 141 | MH39 | A2 | S | + | + | + | t7867 | 2454 | 9 | |||
| 142 | TG2 | E4 | S | − | − | − | t7867 | 5419 | 9 | |||
| 143 | TG3 | E4 | S | − | − | − | t7867 | 2454 | 9 | |||
| 144 | TG4 | E2 | S | 2 | + | IVb | − | − | − | t4522 | 2454 | 9 |
| 145 | TG5 | E4 | S | − | − | − | t17680 | 2454 | 9 | |||
| 146 | TG6 | E4 | S | − | − | − | t7867 | 2454 | 9 | |||
| 147 | TG7 | E4 | S | − | − | − | t7867 | 2454 | 9 | |||
| 148 | TG8 | E7 | S | − | − | − | t1201 | 2459 | 97 | |||
| 149 | TG9 | E7 | S | − | − | − | t1201 | 2219 | 97 | |||
| 150 | TG10 | E2 | S | 1 | + | IVb | − | − | − | t4522 | 2454 | 9 |
| 151 | TG11 | E4 | S | − | − | − | t17680 | 2454 | 9 | |||
| 152 | TG13 | E2 | S | − | − | − | t4522 | 5420 | 9 | |||
| 153 | TG14 | E4 | R | 32 | + | IVb | − | − | − | t7867 | 2454 | 9 |
| 154 | TG15 | E2 | R | 8 | + | IVb | + | − | − | NT | 2454 | 9 |
| 155 | UP2 | E1 | S | 1 | + | IVb | − | − | − | t7867 | 2454 | 9 |
| 156 | UP3 | D3 | R | > 64 | + | IVb | − | − | − | t7867 | 2454 | 9 |
| 157 | UP4 | E1 | S | − | − | − | t7867 | 2454 | 9 | |||
| 158 | UP5 | D3 | S | 1 | + | IVb | − | − | − | t17680 | 2454 | 9 |
| 159 | UP6 | E4 | S | 2 | + | IVb | − | + | − | t7867 | 2454 | 9 |
| 160 | UP7 | D3 | R | 64 | − | − | − | t17680 | 2454 | 9 | ||
| 161 | UP10 | E4 | S | − | − | − | t17680 | 2454 | 9 | |||
| 162 | UP11 | E4 | S | − | − | − | NT | 2454 | 9 | |||
| 163 | UP13 | NT | S | − | − | − | t4522 | 2454 | 9 | |||
| 164 | UP14 | E4 | R | 64 | − | − | − | t7867 | 2454 | 9 | ||
| 165 | UP15 | NT | R | 64 | − | − | − | t4522 | 2454 | 9 | ||
| 166 | UP16 | E4 | S | − | − | − | t7867 | 2454 | 9 | |||
CC = Clonal complex; GJ = Gujarat; KA = Karnataka; MG = Meghalaya; MH = Maharashtra; MIC = minimum inhibitory concentration; OXA = oxacillin; NT = Non-typable; ST = Sequence Type; TG = Telangana; UA = Unassigned; UP = Uttar Pradesh.