Table 1.
Key differences between lgpr and LonGP
| lgpr | LonGP (Cheng et al., 2019) | |
|---|---|---|
| Available kernels | BIN, CAT, ZS, EQ, NS (parameterized warping), VM | BIN, CAT, EQ, PER, NS (fixed warping) |
| Available observation models | Gaussian, Poisson, NB, binomial, BB | Gaussian |
| Bayesian inference | Dynamic HMC | Slice sampling and CCD (Vanhatalo et al., 2013) |
| Heterogeneous effects | Available | Not available |
| Covariate uncertainty | Available | Not available |
| Covariate relevance assessment | Decomposition of variance | Stepwise model search with crossvalidation |
Note: Kernel name abbreviations: BIN, binary mask; CAT, categorical; ZS, zero-sum; EQ, exponentiated quadratic; NS, non-stationary; VM, variance mask; PER, periodic. The input warping steepness (a in Equation 3) is fixed in LonGP but sampled in lgpr.