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. 2021 Jan 21;37(13):1860–1867. doi: 10.1093/bioinformatics/btab021

Table 1.

Key differences between lgpr and LonGP

lgpr LonGP (Cheng et al., 2019)
Available kernels BIN, CAT, ZS, EQ, NS (parameterized warping), VM BIN, CAT, EQ, PER, NS (fixed warping)
Available observation models Gaussian, Poisson, NB, binomial, BB Gaussian
Bayesian inference Dynamic HMC Slice sampling and CCD (Vanhatalo et al., 2013)
Heterogeneous effects Available Not available
Covariate uncertainty Available Not available
Covariate relevance assessment Decomposition of variance Stepwise model search with crossvalidation

Note: Kernel name abbreviations: BIN, binary mask; CAT, categorical; ZS, zero-sum; EQ, exponentiated quadratic; NS, non-stationary; VM, variance mask; PER, periodic. The input warping steepness (a in Equation 3) is fixed in LonGP but sampled in lgpr.