Table 2. Performance of the Final pdCSM-Cancer Regression Models on Cross-Validation and Blind Test Sets.
tissue | cell lines | Pearson (CV) | Pearson (blind test) |
---|---|---|---|
CNS | SF-268 | 0.66 | 0.59 |
SF-295 | 0.68 | 0.59 | |
SF-539 | 0.66 | 0.59 | |
SNB-19 | 0.66 | 0.61 | |
SNB-75 | 0.63 | 0.59 | |
SNB-78 | 0.61 | 0.52 | |
U251 | 0.69 | 0.63 | |
XF-498 | 0.60 | 0.51 | |
breast | BT-549 | 0.65 | 0.56 |
HS-578 T | 0.64 | 0.54 | |
MCF7 | 0.69 | 0.59 | |
MDA-MB-231_ATCC | 0.68 | 0.58 | |
MDA-MB-468 | 0.58 | 0.49 | |
T-47D | 0.64 | 0.56 | |
colon | COLO-205 | 0.67 | 0.58 |
DLD-1 | 0.66 | 0.59 | |
HCC-2998 | 0.63 | 0.63 | |
HCT-116 | 0.69 | 0.61 | |
HCT-15 | 0.63 | 0.56 | |
HT29 | 0.67 | 0.65 | |
KM12 | 0.66 | 0.59 | |
KM20L2 | 0.62 | 0.53 | |
SW-620 | 0.69 | 0.59 | |
leukemia | CCRF-CEM | 0.65 | 0.59 |
HL-60 TB | 0.63 | 0.56 | |
K-562 | 0.66 | 0.57 | |
MOLT-4 | 0.67 | 0.59 | |
P388_ADR | 0.69 | 0.67 | |
P388 | 0.74 | 0.65 | |
RPMI-8226 | 0.63 | 0.59 | |
SR | 0.63 | 0.62 | |
ovarian | IGROV1 | 0.66 | 0.57 |
NCI_ADR-RES | 0.65 | 0.56 | |
OVCAR-3 | 0.67 | 0.58 | |
OVCAR-4 | 0.63 | 0.62 | |
OVCAR-5 | 0.64 | 0.54 | |
OVCAR-8 | 0.68 | 0.59 | |
SK-OV-3 | 0.65 | 0.57 | |
prostate | DU-145 | 0.67 | 0.58 |
PC-3 | 0.69 | 0.59 | |
renal | 786-0 | 0.65 | 0.56 |
A498 | 0.64 | 0.63 | |
ACHN | 0.68 | 0.59 | |
CAKI-1 | 0.65 | 0.56 | |
RXF-393 | 0.65 | 0.56 | |
RXF-631 | 0.66 | 0.63 | |
SN12C | 0.65 | 0.59 | |
SN12K1 | 0.74 | 0.65 | |
TK-10 | 0.64 | 0.61 | |
UO-31 | 0.65 | 0.55 | |
non-small cell lung | A549_ATCC | 0.68 | 0.58 |
EKVX | 0.62 | 0.53 | |
HOP-18 | 0.54 | 0.48 | |
HOP-62 | 0.65 | 0.59 | |
HOP-92 | 0.60 | 0.57 | |
LXFL-529 | 0.67 | 0.59 | |
NCI-H226 | 0.64 | 0.54 | |
NCI-H23 | 0.69 | 0.59 | |
NCI-H322M | 0.64 | 0.67 | |
NCI-H460 | 0.69 | 0.63 | |
NCI-H522 | 0.67 | 0.57 | |
small cell lung | DMS-114 | 0.67 | 0.58 |
DMS-273 | 0.58 | 0.48 | |
melanoma | LOX-IMVI | 0.67 | 0.59 |
M14 | 0.66 | 0.58 | |
M19-MEL | 0.66 | 0.59 | |
MALME-3 M | 0.64 | 0.59 | |
MDA-MB-435 | 0.68 | 0.59 | |
MDA-N | 0.66 | 0.61 | |
SK-MEL-28 | 0.66 | 0.59 | |
SK-MEL-2 | 0.65 | 0.56 | |
SK-MEL-5 | 0.66 | 0.64 | |
UACC-257 | 0.65 | 0.59 | |
UACC-62 | 0.67 | 0.59 |