Table 1. Summary of sequenced catfish genomes.
Species | Family | Sequencing platform | Assembly size (Mb) | Identified genes | Scaffold N50 (Mb) | Contig N50 (kb) | References |
Longsnout catfish, Leiocassis longirostris | Bagridae | BGISEQ-500, Nanopore, Hi-C | 703.19 | 23 708 | 28.03 | 3 090.00 | This study |
Yellow catfish, Pelteobagrus fulvidraco | Bagridae | Illumina, PacBio, Hi-C | 732.80 | 24 552 | 25.80 | 1 100.00 | Gong et al., 2018 |
Illumina, PacBio | 714.00 | 21 562 | 3.65 | 970.00 | Zhang et al., 2018 | ||
Glyptosternon maculatum | Sisoridae | PacBio, Illumina, 10X Genomics, BioNano | 662.34 | 22 066 | 20.90 | 993.67 | Liu et al., 2018 |
Channel catfish, Ictalurus punctatus | Ictaluridae | Illumina | 845.40 | 21 556 | 7.25 | 48.50 | Chen et al., 2016 |
Illumina, PacBio | 783.00 | 26 661 | 7.73 | 77.20 | Liu et al., 2016 | ||
Giant devil catfish, Bagarius yarrelli | Sisoridae | Illumina, PacBio | 571.00 | 19 027 | 3.10 | 1 600.00 | Jiang et al., 2019 |
Walking catfish, Clarias batrachus | Clariidae | Illumina | 821.00 | 22 914 | 0.36 | 19.00 | Li et al., 2018 |
Striped catfish, Pangasianodon hypophthalmus | Pangasiidae | Illumina | 700.00 | 28 600 | 14.29 | 6.00 | Kim et al., 2018 |