Table 2.
Top 10 KEGG pathways potentially affected by the differentially expressed miRNAs in each clinical group evaluated: tumor size, LN, and REC status (ranked by p-value)
| # | KEGG pathways | p-value | # genes | # miRNAs |
|---|---|---|---|---|
| Tumor size (≥5 cm, < 5 cm) | ||||
| 1 | Ubiquitin mediated proteolysis | 1.46E-05 | 40 | 7 |
| 2 | Circadian rhythm | 0.002970639 | 14 | 7 |
| 3 | Proteoglycans in cancer | 0.002970639 | 42 | 7 |
| 4 | Renal cell carcinoma | 0.004487894 | 18 | 7 |
| 5 | Signaling pathways regulating pluripotency of stem cells | 0.004646529 | 33 | 6 |
| 6 | Endocytosis | 0.004646529 | 44 | 8 |
| 7 | Glioma | 0.007370446 | 17 | 7 |
| 8 | Oocyte meiosis | 0.015388458 | 25 | 7 |
| 9 | RNA degradation | 0.022814164 | 21 | 6 |
| 10 | Prolactin signaling pathway | 0.022814164 | 17 | 6 |
| LN status | ||||
| 1 | Mucin type O-Glycan biosynthesis | 3.42E-10 | 14 | 8 |
| 2 | Proteoglycans in cancer | 6.78E-10 | 32 | 9 |
| 3 | Signaling pathways regulating pluripotency of stem cells | 3.68E-07 | 55 | 9 |
| 4 | TGF-beta signaling pathway | 3.17E-06 | 68 | 8 |
| 5 | Glycosaminoglycan biosynthesis – heparan sulfate/heparin | 5.72E-06 | 38 | 7 |
| 6 | Hippo signaling pathway | 6.54E-06 | 2 | 2 |
| 7 | FoxO signaling pathway | 6.94E-06 | 49 | 8 |
| 8 | Circadian rhythm | 2.90E-05 | 52 | 9 |
| 9 | ErB signaling pathway | 3.54E-05 | 44 | 9 |
| 10 | Phosphatidylinositol signaling system | 6.34E-05 | 25 | 7 |
| REC status | ||||
| 1 | Prion diseases | 1.07E-05 | 10 | 8 |
| 2 | Proteoglycans in cancer | 1.07E-05 | 91 | 20 |
| 3 | Mucin type O-Glycan biosynthesis | 1.34E-05 | 15 | 12 |
| 4 | Cell adhesion molecules (CAMs) | 1.84E-05 | 65 | 18 |
| 5 | TGF-beta signaling pathway | 3.45E-05 | 40 | 16 |
| 6 | Axon guidance | 3.45E-05 | 65 | 16 |
| 7 | Oxytocin signaling pathway | 0.001164 | 76 | 18 |
| 8 | N-Glycan biosynthesis | 0.003947 | 21 | 15 |
| 9 | Thyroid hormone signaling pathway | 0.003947 | 53 | 19 |
| 10 | Signaling pathways regulating pluripotency of stem cells | 0.004389 | 65 | 20 |