Table 3.
Predicted candidate genes in QTLs associated with the firmness in the ‘BS F2 (II)’ population.
| QTL | Gene id | Chromosome | Description | Function |
|---|---|---|---|---|
| FIRM_6-1b | g00026256 | 6-1 | AGPS1: Glucose-1-phosphate adenylyltransferase | Starch metabolism |
| FIRM_6-1a | g00022909 | 6-1 | pgi: Glucose-6-phosphate isomerase | |
| FIRM_5-1 | g00095935 | 5-1 | Fructose-1-6-bisphosphatase | |
| FIRM_6-1b | g00026183 | 6-1 | PGK1: Phosphoglycerate kinase 1 | |
| FIRM_6-1a | g00022504 | 6-1 | EXPA3: Expansin-A3 | Cell wall biogenesis |
| FIRM_5-1 | g00096667 | 5-1 | PAE8: Pectin acetylesterase 8 | /organization |
| FIRM_6-1a | g00022632 | 6-1 | At1g30350: Probable pectate lyase 4 | |
| FIRM_6-1b | g00026309 | 6-1 | FLA2: Fasciclin-like arabinogalactan protein | |
| FIRM_3-3 | g00043907 | 3-3 | ADF1: Actin-depolymerizing factor 1 | |
| FIRM_5-1 | g00096474 | 5-1 | XTH30: Probable xyloglucan endotransglucosylase/hydrolase protein 30 | |
| FIRM_6-4 | g00015379 | 6-4 | BGAL5: Beta-galactosidase 5 | |
| FIRM_6-1b | g00025976 | 6-1 | TSB2: Tryptophan synthase | Auxin metabolism |
| FIRM_5-1 | g00096359 | 5-1 | ARG7: Indole-3-acetic acid-induced protein ARG7 | |
| FIRM_6-4 | g00015654 | 6-4 | LAX2: Auxin transporter-like protein 2 | |
| FIRM_5-1 | g00096205 | 5-1 | NAC071: NAC domain-containing protein 71 | |
| FIRM_6-1a | g00022839 | 6-1 | PAL1: Phenylalanine ammonia-lyase 1 | Secondary metabolism/ |
| FIRM_6-4 | g00015421 | 6-4 | DFR: Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase | Lignin biosynthesis |
| FIRM_6-1a | g00022908 | 6-1 | 4CLL7: 4-coumarate–CoA ligase-like 7 | |
| FIRM_5-1 | g00096156 | 5-1 | PER20: Peroxidase 20 | |
| FIRM_6-1b | g00026271 | 6-1 | CAD1: Probable cinnamyl alcohol dehydrogenase 1 | |
| FIRM_5-1 | g00095951 | 5-1 | HST: Shikimate O-hydroxycinnamoyltransferase | |
| FIRM_6-1a | g00022790 | 6-1 | PIP2-1: Aquaporin PIP2-1 | Membrane transportation |
| FIRM_6-1b | g00026156 | 6-1 | CYP97B2: Cytochrome P450 97B2 | Lipid biosynthesis |
| FIRM_6-4 | g00015750 | 6-4 | UGT85A5: UDP-glycosyltransferase 85A5 | Defense response/ |
| FIRM_3-3 | g00043806 | 3-3 | Chitinase 2 | glucosinolate biosynthesis |