Key resources table.
| Reagent type (species) or resource | Designation | Source or reference | Identifiers | Additional information |
|---|---|---|---|---|
| Genetic reagent (Mus musculus, males) | Oct4-delta PE-GFP | PMID:10646797 | C57BL/6J background | |
| Cell line (Human) | HEK293T | ATCC RRID:CVCL_0063 |
CRL-3216 | |
| Antibody | Anti-Cleaved Caspase-3 (rabbit polyclonal) | CST RRID:AB_2341188 |
Cat# 9661 | (1:400) |
| Recombinant DNA reagent | pCpGL (plasmid) | PMID:17965610 | http://www.ag-rehli.de/materials.html | |
| Commercial assay or kit | EZ DNA Methylation-Gold Kit | Zymo Research | Cat# D5005 | |
| Commercial assay or kit | NEBNext Ultra II RNA Library Prep Kit for Illumina | BioLabs | Cat#E7770S | |
| Commercial assay or kit | Dual-Luciferase Reporter Assay System | Promega | Cat#E1910 | |
| Chemical compound, drug | DEHP | Sigma | Cat#80030 | |
| Chemical compound, drug | Corn oil | Sigma | Cat#C8267 | |
| Software, algorithm | Bismark | PMID:21493656 | v0.10.1 | https://www.bioinformatics.babraham.ac.uk/projects/bismark/ |
| Software, algorithm | TopHat2 | PMID:23618408 | V2.1.0 | https://ccb.jhu.edu/software/tophat/index.shtml |
| Software, algorithm | Bowtie2 | PMID:22388286 | V2.2.6.0 | http://bowtie-bio.sourceforge.net/index.shtml |
| Software, algorithm | featureCounts | PMID:24227677 | Packaged in Subread v1.5.0-p2 | http://subread.sourceforge.net/ |
| Software, algorithm | edgeR | PMID:19910308 | V3.13 | https://bioconductor.org/packages/release/bioc/html/edgeR.html |