Table 2.
Oligos involved in this study.
| Gene symbols | For real-time qPCR | |
|---|---|---|
| Sequences | ||
| Forward (5′ →3′) | Reverse (5′ →3′) | |
| ADIPOQ-AS1 | GGATTCCCGGAAAGCCTCGG | GAGATGGCACCCCGTGGACC |
| AGBL5-AS1 | GCGCATTATCGGGCTGTGCC | CACCCGGGACACCTAGACAT |
| C14orf132 | GCCCAGAGACAGCCGAGTGC | AAGTCCTCGTTGGGCGAGTC |
| CPEB1-AS1 | CAAGGGAGCGGGTGTCTGGA | CAGGCAGCTGGCAGGACCTG |
| DDX11-AS1 | GGTTCTGGGAGATGACCAATGG | CCATAGTTTCAGGATGCTGGCAG |
| ELF3-AS1 | CATCACCTGCCTGGACTCCA | GCGGTTCGTGATGACTTCACC |
| ELOA-AS1 | CAGCAAGACTGTCAGCTCGG | AGCCCAGGATACAGAGCCAG |
| EMX2OS | GCGGAGTATTGATCGGCTGC | GGCATGCCCTGCCTTCATTC |
| FAM87B | GAAGGCGCCTCCCTCTGTGG | CTGCAGGCCGAGCACACACC |
| FGD5-AS1 | CTCCACCCTGCCTTCTCGCT | CTTCTTAAGCCACCACTGCACTG |
| HCG23 | AGGGCCTTCACAAGCACAGAC | ACTTCTCATGTGTTAGGGAGGCTG |
| HHIP-AS1 | CTTCCCCTCCGCACTGCCTG | CACCACTCTGTCGGTTTAGCTG |
| HOTAIRM1 | AGCAAAAGCTGCGTTCTGCG | AGCTGTTGATGGGTTCAGGCA |
| HOXA-AS2 | CCTGGTGCAAAGTCCCACGC | TTCTCCAAGCCAGGGTCCGG |
| LIF-AS1 | GGCACAGGAGCTGACACTTACA | CCCTTGATCCCAGGAGGTGG |
| LINC00028 | GTCTTCCCCCACCCCAAGCT | GAGACCCAGTGGCTCATGCC |
| LINC00337 | GGGCAGACACAGGGTCTCACT | AGGTCACAAAGCTAGGCCGC |
| LINC00346 | AGTGGACAGTCTCAGGTCAGGG | AGTGGACAGTCTCAGGTCAGGG |
| LINC00461 | TCCCCAGAAGGGAAGACCCAT | CATTTGATCTCCCTGCGCCAGG |
| LINC00467 | CAGCACCGATCCCGACATAGAT | AGGGTCAGCCCAGTTTCAGTC |
| LINC00484 | GCTCCACGGCTCTTGACAGG | TCAGGATCTCAGGTGCGCTG |
| LINC00515 | GTTGAACGGAGCAGTGATGTGG | GCGTGGAGGTCAGGACTACGGA |
| LINC00852 | GGCTAAGGTGGGCATGACCG | AGACAGCACTGAAAGAGCTGCA |
| LINC00893 | CAGGCTGTGCTCACACCAAT | GTGACCACGCAGTAATGCAGC |
| LINC00908 | TGCAGAGTGGGGTCTCCCTG | AGAAACTCCGTCAGTGCTCCC |
| LINC00909 | GCTTGAACCCAGTGGCGGAG | CGCAGCTTAGCTCCCACTTACG |
| LINC00917 | TCCCTAGGCCAGGCTGGAGG | GGGTATGCCCTGTGTGACACC |
| LINC00921 | GCTTGGAAACCCAGCTAGATGG | TCTCCTAACTACTTCCTGCAGCA |
| LINC00996 | GAAGCTGGGAGGAGTCCGCC | GGTCTTGATTGATTCCTGTGTCCC |
| LINC01039 | AGCATGGCCCTTGATCTCAGG | TCAGAGATAGCCACACTGGCC |
| LINC01088 | TGGATTCCCGGAAAGCCTCG | GCCGTGATGGCAGAGATGGC |
| LINC01140 | TTGCTCCCCATCGGTCGCTG | ATCTGTGGGTGACACTGGACC |
| LINC01197 | GTGCTAGCGGTGCCCTTGTG | CAGCTTGGATACCGCTTCTTGG |
| LINC01320 | AGCCGACATCAGTCTCCAGAG | TACCTTCCGCAGATTAGTTACATG |
| LINC01354 | GCCGAGAACACGTCTGGAGC | TCTCAGCAATTTGGGAGACCG |
| LINC01365 | GCTTCCTTGCAAGAACCTTCCC | GAATTAGCCACTTGGCTCTGGC |
| LINC01391 | GGCAGGTAGCAGCCCACCTC | CGCGCAGTGTGGCTACCGAA |
| LINC01563 | GAGAGCAAGCCGGAAGTGCT | CCCCTCAGTCACCGTATTCAG |
| LINC01626 | CTCCCCATCATCCCAGTGTG | AGAGTGGAGTGATTCCTAGCACC |
| LINC01638 | GCTCACCTCCTCCATCCCATG | GCTGGATGTGGTGGTGTGTAAC |
| LINC01881 | CAGTCACAGCATAGGCATGGC | GTGCTCAGCTGAGTCTGCAG |
| LINC02158 | ACACTCACCGCGAGGGTCTG | CAGCGCCTCTGTCACTTTCAG |
| LINC02278 | GATGTTACCCACCACCACCTCT | TGGGGATTAAGCACTCCATCCC |
| LINC02432 | TCATGCCAGGAGAAGCCTCC | ATCAATGCTGGTGGTTGAGGTG |
| LINC02502 | CTCTACTGCCTTCCAAGGTTTC | CCCTGGAATCCAGGACAGCC |
| LINC02609 | TAAGACACCTGCGGAGCTCG | TGCCGTGCTGTCCTCAGCAG |
| LMF1-AS1 | CCCCATCACAGACTGCGCTT | TCTGCCCCGAACTCTCTGGC |
| MCF2L-AS1 | CTCTCTGAGCTCTCCTCGCC | CTTGCTACATTGCCCAGGCTC |
| MIR100HG | CCCCTCCTCAGGAATGTCTCC | GTTCTAGTGGCAGAAGCTGCAC |
| MIR3936HG | TCCACCTGCCTCAGCCTCCC | CTGGGGAGGAGGTGTGCTTC |
| MIR99AHG | GGCAACATAACCAAATGAGCCTTC | CTTCCCATTCTGACCTCAGC |
| MLIP-AS1 | GAAGCTCAGTCTAAGTGCCTGC | ACTTGAGATTAGCTGCAGAGCC |
| PCAT19 | GAGCTCCTCCCTTTCCTCGG | CTTTCCACAGGTGAGGGACC |
| PCOLCE-AS1 | CCTCAAGACAGAGGCAGCAGC | TGCAGGACCGCACGGAGAAG |
| PGM5-AS1 | TGTGGGGACTGTGGGCAGTG | CCCAGCAGGTTTCAACAGACG |
| PROSER2-AS1 | CTGAGTTCAAGCGGTCCTCC | AGCAACCAGCCAGGCAGCAC |
| RBMS3-AS3 | CTACCCCACACAAGAGCTGC | AGGAGTTCCGGAATCCACACC |
| SEMA3B-AS1 | CACAGGTTGGAGGTGGGAGG | CTTCAGGGCTCCACTCTGCC |
| SLC16A1-AS1 | TCCTGAGAGGTCCCATGTGC | CATGTGCCATGTTGGTGTGC |
| SNAI3-AS1 | GATCAGGGTGGCTGTTCTTGG | CCTCGTGGTCACAGCTCAGC |
| STAM-AS1 | CGTGTCCCTCGGAGAGGCTG | GGGTTGCTAGGAATCACTCACTG |
| SVIL-AS1 | TGTTGCACCCTGAAGAGCCTC | GTCTTAGGGACTCAGGGCACC |
| TRAF3IP2-AS1 | CTCACACTTGCCTCGCCGAC | ATCTCAGCAGAATGCTCGTGGG |
| TTN-AS1 | AGAGGCAGGACTGGCTAGGT | AAGAACTGCCAGAGGAGCCAT |
| TUG1 | CATCTCACAAGGCTGCACCAG | CTTAGGTGTCACCACGGTGGT |
| XIST | ATGTCAAAAGATCGGCCCAGC | ATTAGCTGGAGCTTGGCCAG |
| ZBTB20-AS5 | AGGGAAGGGGAACCTGCTAG | GGGACTTCTCTGTGCTCTGCC |
| ZEB1-AS1 | GAAAGGGACGCCTGGTTTCC | CCACCTAGGATCCCACGGTTC |
| MBTD1 | GGCATGGCTACCTGTGAGATG | GGCCAAAATGCTTGCCTTCT |
| STARD3NL | TTGGTGGGCAATAGCGTTGA | GCAGCACATAGCCAAAAGCC |
| ZNF839 | GTACAGCCGCTTGTGAGAAC | CTGGGACTCTCTTTGCAGGG |
| JARID2 | ACCAGTCTAAGGGATTAGGACC | TGCTGGGACTATTCGGCTGA |
| NRXN3 | AGTGGTGGGCTTATCCTCTAC | CCCTGTTCTATGTGAAGCTGGA |
| FAS | TCTGGTTCTTACGTCTGTTGC | CTGTGCAGTCCCTAGCTTTCC |
| CALCR | TTACCCGCATACCAAGGAGAA | TGGGCAGAACTGATAGGACAATA |
| LASP1 | CGAGAAGAAGCCCTACTGCAA | CTGCCACTACGCTGAAACCT |
| DEPDC1 | TTTTGGTCCTGAAGTTACAAGGC | TGGATACCTTCGTGGTAGAGTTT |
| SS18L2 | ATCCGCTGTATTGTGGAGTATCA | GCATCTGCAATGGTAGCCAAAT |
| CREBBP | CAACCCCAAAAGAGCCAAACT | CCTCGTAGAAGCTCCGACAGT |
| MRC2 | CGAGGAGGACCTATGTGCTCT | CGCTCGTCTTTGCCGTAGT |
| PIK3C2A | AAATGGGACCAGTAGTTTGCC | GGGTTTGTGCGGTGATTGGTA |
| ALAS1 | AGGCCAAGGTCCAACAGACT | TCCTCACGGCATTCATTTCCT |
| ETV1 | TGGCAGTTTTTGGTAGCTCTTC | CGGAGTGAACGGCTAAGTTTATC |
| BTBD7 | AAAGGAGCTTTCTCTACAAGCC | GCCCCATACTCTGGTGAGGAA |
| MAP3K9 | TACCCGCCCATTCAGTTGTTA | CCTCTTGGCGAACATTCTCTATG |
| HOXA11 | TGCCAAGTTGTACTTACTACGTC | GTTGGAGGAGTAGGAGTATGTCA |
| ISL1 | GCGGAGTGTAATCAGTATTTGGA | GCATTTGATCCCGTACAACCT |
| ShRNA sequences (5'- >3') | ||
| LINC00909#1 | CCGGGAGGGCTGTCTGGGATTTCTACTCGAGTAGAAATCCCAGACAGCCCTCTTTTTTG | |
| AATTCAAAAAAGAGGGCTGTCTGGGATTTCTACTCGAGTAGAAATCCCAGACAGCCCTC | ||
| LINC00909#2 | CCGGGCAAGGCGAGAATGCTACTTTCTCGAGAAAGTAGCATTCTCGCCTTGCTTTTTTG | |
| AATTCAAAAAAGCAAGGCGAGAATGCTACTTTCTCGAGAAAGTAGCATTCTCGCCTTGC | ||
| LINC00909#3 | CCGGCCGATTTCGAGAAATGACTTTCTCGAGAAAGTCATTTCTCGAAATCGGTTTTTTG | |
| AATTCAAAAAACCGATTTCGAGAAATGACTTTCTCGAGAAAGTCATTTCTCGAAATCGG | ||
| LINC00909#4 | CCGGGACTCTGTAATGGGAAGTTATCTCGAGATAACTTCCCATTACAGAGTCTTTTTTG | |
| AATTCAAAAAAGACTCTGTAATGGGAAGTTATCTCGAGATAACTTCCCATTACAGAGTC | ||
| LINC00909#5 | CCGGCTTGCTAAAGAGGTTTGACTACTCGAGTAGTCAAACCTCTTTAGCAAGTTTTTTG | |
| AATTCAAAAAACTTGCTAAAGAGGTTTGACTACTCGAGTAGTCAAACCTCTTTAGCAAG | ||
| MRC2#1 | CCGGCCGGTATTGCTATAAGGTGTTCTCGAGAACACCTTATAGCAATACCGGTTTTTG | |
| AATTCAAAAACCGGTATTGCTATAAGGTGTTCTCGAGAACACCTTATAGCAATACCGG | ||
| MRC2#2 | CCGGGAAATGAATGAGCAGCAAGAACTCGAGTTCTTGCTGCTCATTCATTTCTTTTTG | |
| AATTCAAAAAGAAATGAATGAGCAGCAAGAACTCGAGTTCTTGCTGCTCATTCATTTC | ||
| LASP1#1 | CCGGCCAGGACCAGATCAGTAATATCTCGAGATATTACTGATCTGGTCCTGGTTTTTG | |
| AATTCAAAAACCAGGACCAGATCAGTAATATCTCGAGATATTACTGATCTGGTCCTGG | ||
| LASP1#2 | CCGGGAACTACAAGGGCTACGAGAACTCGAGTTCTCGTAGCCCTTGTAGTTCTTTTTG | |
| AATTCAAAAAGAACTACAAGGGCTACGAGAACTCGAGTTCTCGTAGCCCTTGTAGTTC | ||
| ZNF839#1 | CCGGGACTTCCGATGGGCTTATCTTCTCGAGAAGATAAGCCCATCGGAAGTCTTTTTTG | |
| AATTCAAAAAAGACTTCCGATGGGCTTATCTTCTCGAGAAGATAAGCCCATCGGAAGTC | ||
| ZNF839#2 | CCGGGAGCCATGAGTTACTGTCTCACTCGAGTGAGACAGTAACTCATGGCTCTTTTTTG | |
| AATTCAAAAAAGAGCCATGAGTTACTGTCTCACTCGAGTGAGACAGTAACTCATGGCTC | ||