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. 2021 Jun 23;6(8):1094–1101. doi: 10.1038/s41564-021-00933-9

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© The Author(s) 2021

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 1 — All high-coverage complete sequences from Uganda (n = 322) were lineage-typed using the pangolin resource (https://github.com/cov-lineages/pangolin). Lineage counts were stratified into four periods: March–May 2020 (a); June–August 2020 (b); September–November 2020 (c); and December 2020 to January 2021 (d). The percentage of each lineage within each set was plotted as a treemap using squarified treemap⁴¹ implemented in squarify (https://github.com/laserson/squarify) with the size of each sector proportional to the number of genomes; genome numbers are listed with ‘n = ’.

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