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. 2021 Mar 1;15(8):2322–2335. doi: 10.1038/s41396-021-00926-w

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© The Author(s) 2021

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 2 — a Number of communities (at least 10 nodes) detected over a varying Mash similarity threshold. Median and IQR bar shown. b Cumulative proportion of nodes recruited in a detected community of at least ten nodes over a varying Mash similarity threshold. Median and IQR bars shown. c Gaussian kernel density estimates of Mash similarities stratified by compartment. Bandwidth = 0.00864 calculated by Silverman’s ‘rule of thumb’. Density medians are indicated with vertical lines. d Evolution of the largest connected component and number of components over a varying Mash similarity threshold.