Table 1.
Pathway | Associated taxaa | Modern productivity (Pg C/yr)b | 13C/12C isotope discrimination Δδ13C (‰) | Isotope discrimination references | Pathway O2 sensitive?b |
---|---|---|---|---|---|
CBB |
Cyanobacteria [97] photoautotrophs Proteobacteria [100] autotrophic Alpha-, Beta-, Gammaproteobacteria Chloroflexi [101] Oscillochloridaceae Firmicutes [102] Sulfobacillus spp. |
~100 | ~10 to 35 | [26, 44, 45, 103–105] | Yes |
rTCA |
Aquificae [106] Aquificales Chlorobi [107] Chlorobiales Nitrospirae [108] autotrophs Proteobacteria Magnetococcus sp. MC-1 Desulfobacter hydrogenophilus |
~1 | ~2 to 23 | [44, 45, 103–105] | Yes |
roTCA |
Aquificae Thermosulfidibacter takaii Proteobacteria sulfur-reducing Deltaproteobacteria |
Unknown | Unknown | N/A | Unknown |
HP/HB |
Crenarchaeota [109] Sulfolobales Marine group I [110] Thaumarchaeota [111] |
~0.7 | ~0 to 4 | [44] | No |
Wood–Ljungdahl |
Euryarchaeota [112] Archaeoglobales methanogens Firmicutes acetogens Planctomycetes [113] anaerobic ammonium-oxidizers Proteobacteria autotrophic Deltaproteobacteria Spirochaetes [113] Treponema primitia |
~0.1 | ~5 to 80 | [45, 46, 50, 51, 53, 114] | Yes |
DC/HB |
Crenarchaeota Thermoproteales Desulfurococcales |
<0.1 | ~0 to 4 | [44, 45] | Yes |
3HP |
Chloroflexi Chloroflexaceae |
<0.1 | ~0 to 14 | [20, 44, 115] | No |
Reductive glycinec |
Proteobacteria Candidatus Phosphitivorax anaerolimi |
<0.1 | Unknown | N/A | Unknown |
Isotopic discrimination reported from literature, calculated as Δδ13C = δ13Cproduct − δ13Creactant, where product is biomass (or acetate/methane for acetogens/methanogens, respectively, utilizing the Wood–Ljungdahl pathway) and reactant is source carbon in growth media.
CBB Calvin–Benson–Bassham cycle, DC/HB dicarboxylate–4-hydroxybutyrate cycle, HP/HB 3-Hydroxyproprionate/4-hydroxybutyrate cycle, roTCA reverse oxidative tricarboxylic acid cycle, rTCA reductive citric acid cycle, 3HP 3-hydroxyproprionate bicycle.
aAssociated taxa from Berg et al. [37], Hugler and Sievert [116], Ward and Shih [25], and references therein. References for definitions of informal taxonomic groups are listed within the table at first instance. Listed taxa are not necessarily diagnostic of each pathway, but rather describe major groups of organisms where pathway can be found.
bModern productivity values from [38, 117–121], and O2 sensitivity data from Berg [122].
cRecently proposed pathway for the Deltaproteobacterium Candidatus Phosphitivorax anaerolimi [36].