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. 2021 Apr 12;15(8):2183–2194. doi: 10.1038/s41396-021-00971-5

Table 1.

Isotopic discrimination, productivity, and O2 sensitivity of extant carbon fixation pathways.

Pathway Associated taxaa Modern productivity (Pg C/yr)b 13C/12C isotope discrimination Δδ13C (‰) Isotope discrimination references Pathway O2 sensitive?b
CBB

Cyanobacteria [97]

Eukaryota [98, 99]

 photoautotrophs

Proteobacteria [100]

 autotrophic Alpha-, Beta-, Gammaproteobacteria

Chloroflexi [101]

 Oscillochloridaceae

Firmicutes [102]

 Sulfobacillus spp.

~100 ~10 to 35 [26, 44, 45, 103105] Yes
rTCA

Aquificae [106]

 Aquificales

Chlorobi [107]

 Chlorobiales

Nitrospirae [108]

 autotrophs

Proteobacteria

 Magnetococcus sp. MC-1

 Desulfobacter hydrogenophilus

~1 ~2 to 23 [44, 45, 103105] Yes
roTCA

Aquificae

 Thermosulfidibacter takaii

Proteobacteria

 sulfur-reducing Deltaproteobacteria

Unknown Unknown N/A Unknown
HP/HB

Crenarchaeota [109]

 Sulfolobales

 Marine group I [110]

Thaumarchaeota [111]

~0.7 ~0 to 4 [44] No
Wood–Ljungdahl

Euryarchaeota [112]

 Archaeoglobales

 methanogens

Firmicutes

 acetogens

Planctomycetes [113]

 anaerobic ammonium-oxidizers

Proteobacteria

 autotrophic Deltaproteobacteria

Spirochaetes [113]

 Treponema primitia

~0.1 ~5 to 80 [45, 46, 50, 51, 53, 114] Yes
DC/HB

Crenarchaeota

 Thermoproteales

 Desulfurococcales

<0.1 ~0 to 4 [44, 45] Yes
3HP

Chloroflexi

 Chloroflexaceae

<0.1 ~0 to 14 [20, 44, 115] No
Reductive glycinec

Proteobacteria

 Candidatus Phosphitivorax anaerolimi

<0.1 Unknown N/A Unknown

Isotopic discrimination reported from literature, calculated as Δδ13C = δ13Cproduct − δ13Creactant, where product is biomass (or acetate/methane for acetogens/methanogens, respectively, utilizing the Wood–Ljungdahl pathway) and reactant is source carbon in growth media.

CBB Calvin–Benson–Bassham cycle, DC/HB dicarboxylate–4-hydroxybutyrate cycle, HP/HB 3-Hydroxyproprionate/4-hydroxybutyrate cycle, roTCA reverse oxidative tricarboxylic acid cycle, rTCA reductive citric acid cycle, 3HP 3-hydroxyproprionate bicycle.

aAssociated taxa from Berg et al. [37], Hugler and Sievert [116], Ward and Shih [25], and references therein. References for definitions of informal taxonomic groups are listed within the table at first instance. Listed taxa are not necessarily diagnostic of each pathway, but rather describe major groups of organisms where pathway can be found.

bModern productivity values from [38, 117121], and O2 sensitivity data from Berg [122].

cRecently proposed pathway for the Deltaproteobacterium Candidatus Phosphitivorax anaerolimi [36].