Table 1.
M. massiliense isolate cohort for genomic analyses.
| Mycobacteria laboratory | Source, disease | No. isolates (No. patients) | References |
|---|---|---|---|
| Sporadic Clone 1 isolates | |||
| UTHSCT | Pulmonary, CF | 12 (8) | This study |
| UTHSCT | Pulmonary, non-CF | 9 (9) | This study |
| UTHSCT | Extrapulmonary | 4 (4) | This study |
| NIH | Pulmonary, non-CF | 1 | This study |
| NIH | Extrapulmonary | 1 | This study |
| Published Clone 1 isolates | |||
| Papworth, UK, outbreak | Pulmonary, CF | 8 (5) | 3 |
| Seattle, WA, outbreak | Pulmonary, CF | 3 (3) | 2 |
| Global study (UK, Australia, US) | Pulmonary, CF | 6 (6) | 8 |
| Great Ormand Hospital, UK | Pulmonary, CF | 1 | 19 |
| Birmingham, UK | Pulmonary, CF | 1 | 20 |
| CO-RDP | Pulmonary, CF | 12 (9) | 9,21 |
| Rio de Janeiro, Brazil, epidemic | Extrapulmonary | 1 | 22 |
| Para, Brazil, epidemic | Extrapulmonary | 1 | 10 |
| Non-Clone 1 control isolates | |||
| UTHSCT | Pulmonary, CF | 3 (2) | This study |
| UTHSCT | Pulmonary, non-CF | 2 (2) | This study |
| NIH | Pulmonary, CF | 2 (2) | This study |
| CO-RDP | Pulmonary, CF | 29 (25) | 9,21 |
| 5S-0304 | Unknown | 1 | Unpublished |
| Marseille, France—CCUG48898T | Pulmonary, non-CF | 1 | 23 |
| University Malaya, Malaysia—M154 | Pulmonary | 1 | 24 |
| Seoul University, Korea—ASAN50594 | Pulmonary | 1 | 25 |
| Total | 100 (84) | ||