TABLE 1.
Single-nucleotide polymorphisms of vaccine strain KSGP 0240 after passage
| Reference position | Type | Lengtha (bp) | Reference | Allele | Countb | Coveragec (×) | Frequency (%) | Overlapping annotationsd | Average quality of variante | Coding region change | Amino acid change |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 17 | SNV | 1 | T | A | 7,705 | 7,760 | 99.29 | 35.53 | |||
| 18578 | Deletion | 1 | A | 3,167 | 3,335 | 94.96 | Gene: LSDV026; CDS: LSDV026 | 35.73 | AOE47602.1:c.479del | AOE47602.1:p.Leu160fs | |
| 22772 | Insertion | 1 | A | 3,147 | 3,437 | 91.56 | 36.39 | ||||
| 28073 | Insertion | 1 | T | 1,806 | 3,916 | 46.12 | 35.85 | ||||
| 84168 | SNV | 1 | C | A | 3,457 | 3,486 | 99.17 | Gene: LSDV089; CDS: LSDV089 | 36.6 | AOE47665.1:c.48G > T | AOE47665.1:p.Leu16Phe |
| 89076 | SNV | 1 | G | T | 3,881 | 3,886 | 99.87 | Gene: LSDV094; CDS: LSDV094 | 36.11 | AOE47670.1:c.254C > A | AOE47670.1:p.Pro85His |
| 125083 | Deletion | 1 | A | 3,771 | 4,119 | 91.55 | 33.62 |
a
Number of nucleotides comprised by the variants.
b
Number of reads mapped to the position, including the variants.
c
Total number of reads mapped onto the variants.
d
CDS, coding DNA sequence.
e
Average read quality score of the bases supporting a variant.