TABLE 1.
List of the measured anatomical traits acquired with ImageJ on the root cross‐section images that have been used to get the GRANAR parameters
Measured anatomical traits on the root cross‐section image | GRANAR parameters | |||
---|---|---|---|---|
Traits | Description from traits to parameter | Tissue type | Properties | Unit |
EpW | Epidermis cell radial width | epidermis | cell_diameter | μm |
ExW | Exodermis cell radial width | exodermis | cell_diameter | μm |
nCF | Number of cortex cell layer | cortex | n_layers | # |
CoW | Cortex width (CoW) divided the number of cortex cell layer (CF) | cortex | cell_diameter | μm |
EnW | Endodermis cell radial width | endodermis | cell_diameter | μm |
PeW | Pericycle cell radial width | pericycle | cell_diameter | μm |
SD | Global stele diameter | stele | layer_diameter | μm |
nS SW |
The number of stele cells on the stele diameter (nS) is used to divide the global stele diameter (SD) in order to obtain the stele cell radial width (SW) | stele | cell_diameter | μm |
MXA MXW |
The Metaxylem vessel area (MXA) is used to calculate the metaxylem vessel diameter (MXW) based on circular assumption | xylem | max_size | μm |
nMX | Number of Metaxylem vessels | xylem | n_files | # |
nPX | Number of Protoxylem vessels (nPX) divided by the number of Metaxylem vessels (nMX) | xylem | ratio | # |