Table 1.
Transcriptomics datasets used to study the metabolic response of the host to SARS-CoV-2.
|
Accession No. |
Cell Lines/Regions | Viral Load MOI | Description | Platform |
|---|---|---|---|---|
| GSE147507 (GEO) | A549 | 0.2 | Human lung adenocarcinomic alveolar basal epithelial cells | Illumina NextSeq 500 |
| A549 | 2 | Human lung adenocarcinomic alveolar basal epithelial cells | ||
| ACE2 | 0.2 | A549 cells transduced with a vector expressing human ACE2 | ||
| ACE2 | 2 | A549 cells transduced with a vector expressing human ACE2 | ||
| Calu3 | 2 | Human adenocarcinomic lung epithelial cells | ||
| lung biopsy | N/A | Lung biopsy from human postmortem | ||
| NHBE | 2 | Primary human bronchial epithelial cells | ||
| GSE152075 (GEO) | swab | N/A | Human nasopharyngeal swab | Illumina NextSeq 500 |
| PRJCA002326 (BioProject) | BALF | N/A | Bronchoalveolar lavage fluid | Illumina HiSeq 2000 |
| PBMC | N/A | Peripheral blood mononuclear cells | MGISEQ-2000 and Illumina NovaSeq |