Table 2.
Public datasets found in each BioProject on the NCBI SRA (as of June 2021) for blood PAXgene tube RNA done in paired end with fastq files available.
| BioProject | # Blood Samples | Study | Total spots | Total bases | Bases per Sample |
|---|---|---|---|---|---|
| PRJNA691933 | 74 | SARS-CoV-2 (Current Study) | 11,927,375,976 | 3,336,510,420,209 | 45,087,978,651 |
| PRJNA588242 | 100 | tuberculous | 17,441,858,528 | 3,473,056,592,305 | 34,730,565,923 |
| PRJNA358580 | 16 | pregnant women | 1,507,551,371 | 304,525,376,942 | 19,032,836,059 |
| PRJNA521868 | 6 | multiple sclerosis | 466,613,597 | 93,322,719,400 | 15,553,786,567 |
| PRJNA702558 | 95 | SARS-CoV-2 | 4,774,111,508 | 1,441,781,675,416 | 15,176,649,215 |
| PRJNA647880 | 105 | sepsis | 5,035,786,125 | 1,510,735,837,500 | 14,387,960,357 |
| PRJNA341405 | 44 | Malaria Vaccine | 2,509,308,757 | 632,345,806,764 | 14,371,495,608 |
| PRJNA679264 | 201 | SARS-CoV-2 | 14,028,038,243 | 2,833,663,725,086 | 14,097,829,478 |
| PRJNA703029 | 70 | Trisomy 21 | 3,206,115,333 | 961,834,599,900 | 13,740,494,284 |
| PRJNA600846 | 101 | Crohn’s disease | 5,928,019,591 | 1,197,459,957,382 | 11,856,039,182 |
| PRJNA728070 | 10 | Spinal Muscular Atrophy | 743,666,190 | 110,857,361,100 | 11,085,736,110 |
| PRJNA430406 | 37 | Cross Tissue | 2,013,009,263 | 402,601,852,600 | 10,881,131,151 |
| PRJNA476781 | 468 | lupus | 25,280,746,391 | 5,056,149,278,200 | 10,803,737,774 |
| PRJNA437114 | 43 | tuberculous meningitis | 2,343,938,349 | 463,538,572,586 | 10,779,966,804 |
| PRJNA579053 | 8 | luminal-B breast cancer | 270,853,633 | 81,256,089,900 | 10,157,011,238 |
| PRJNA664368 | 12 | tuberculous | 572,922,378 | 115,730,320,356 | 9,644,193,363 |
| PRJNA693881 | 47 | Viral Bronchiolitis | 4,320,326,973 | 440,673,351,246 | 9,376,028,750 |
| PRJNA329148 | 26 | idiopathic pneumonia | 1,596,881,008 | 239,532,151,200 | 9,212,775,046 |
| PRJNA251404 | 16 | coronary artery calcification | 961,484,870 | 146,145,700,240 | 9,134,106,265 |
| PRJNA390289 | 172 | Chikungunya infection | 5,324,807,224 | 1,570,379,541,476 | 9,130,113,613 |
| PRJNA634938 | 76 | SARS-CoV-2 | 3,422,333,457 | 677,622,024,486 | 8,916,079,270 |
| PRJNA562305 | 49 | cystic fibrosis | 2,798,471,909 | 419,770,786,350 | 8,566,750,742 |
| PRJNA494155 | 51 | cervical lesions | 1,450,406,148 | 435,121,844,400 | 8,531,800,871 |
| PRJNA632871 | 18 | globin gene depletion | 759,197,460 | 153,357,886,920 | 8,519,882,607 |
| PRJEB14743 | 8 | leishmaniasis | 277,784,189 | 67,426,701,419 | 8,428,337,677 |
| PRJEB23048 | 17 | visceral leishmaniasis | 588,699,414 | 142,931,836,858 | 8,407,755,109 |
| PRJNA639278 | 36 | ADNP syndrome | 987,218,170 | 296,165,451,000 | 8,226,818,083 |
| PRJNA306908 | 12 | Pediatric Tumors | 656,614,836 | 98,641,641,250 | 8,220,136,771 |
| PRJNA357628 | 13 | autoimmune disease genetics | 519,146,305 | 104,867,553,610 | 8,066,734,893 |
| PRJNA591657 | 15 | Plasmodium falciparum | 783,112,666 | 117,466,899,900 | 7,831,126,660 |
| PRJNA638653 | 48 | Tuberculosis | 1,854,820,555 | 370,964,111,000 | 7,728,418,979 |
| PRJEB20731 | 13 | DNASE2 mutations | 599,733,466 | 99,295,863,162 | 7,638,143,320 |
| PRJNA277352 | 14 | multiple sclerosis | 512,318,064 | 103,488,248,928 | 7,392,017,781 |
| PRJNA511891 | 25 | Acne | 601,115,130 | 180,334,539,000 | 7,213,381,560 |
| PRJNA504827 | 31 | Tuberculous Meningitis | 1,098,311,879 | 221,858,999,558 | 7,156,741,921 |
| PRJNA526839 | 52 | influenza vaccine | 1,859,507,256 | 371,901,451,200 | 7,151,950,985 |
| PRJNA680771 | 25 | tuberculosis | 621,704,238 | 178,360,488,275 | 7,134,419,531 |
| PRJEB33892 | 53 | Plasmodium falciparum malaria | 1,875,460,009 | 370,990,061,196 | 6,999,812,475 |
| PRJEB36928 | 19 | Leishmania | 605,785,718 | 132,240,365,548 | 6,960,019,239 |
| PRJNA378794 | 38 | preterm labor | 1,048,641,007 | 264,257,533,764 | 6,954,145,625 |
| PRJNA427575 | 2 | Cryptococcal osteomyelitis | 45,492,469 | 13,647,740,700 | 6,823,870,350 |
| PRJNA454694 | 64 | pregnancies | 2,226,299,528 | 428,877,904,875 | 6,701,217,264 |
| PRJNA384259 | 50 | leishmaniasis | 1,418,303,493 | 330,043,893,650 | 6,600,877,873 |
| PRJEB44660 | 19 | decompression sickness | 1,218,267,812 | 121,826,781,200 | 6,411,935,853 |
| PRJNA552286 | 16 | high altitude | 340,942,208 | 102,282,662,400 | 6,392,666,400 |
| PRJNA305001 | 18 | Acute mountain sickness | 637,689,123 | 114,784,042,140 | 6,376,891,230 |
| PRJNA601661 | 38 | Cardiopulmonary bypass | 1,153,286,556 | 228,604,842,466 | 6,015,916,907 |
| PRJNA630674 | 79 | acute respiratory illness | 4,649,964,787 | 473,952,469,749 | 5,999,398,351 |
| PRJEB41073 | 41 | interferonopathy | 1,481,311,728 | 245,636,835,758 | 5,991,142,336 |
| PRJNA327986 | 36 | Mycobacterium tuberculosis | 1,091,879,049 | 205,237,031,937 | 5,701,028,665 |
| PRJNA608900 | 8 | nephrotic syndrome | 515,074,459 | 43,781,288,465 | 5,472,661,058 |
| PRJNA369684 | 434 | Mycobacterium tuberculosis | 24,108,707,793 | 2,362,653,363,714 | 5,443,901,760 |
| PRJEB27958 | 28 | Aicardi-Goutières syndrome | 941,110,802 | 148,090,827,683 | 5,288,958,132 |
| PRJNA397222 | 275 | malaria vaccination | 13,402,529,173 | 1,370,652,640,846 | 4,984,191,421 |
| PRJNA493832 | 48 | kidney transplantation | 1,058,879,166 | 213,893,591,532 | 4,456,116,490 |
| PRJNA352062 | 914 | Mycobacterium tuberculosis | 41,358,057,742 | 4,053,089,658,716 | 4,434,452,581 |
| PRJEB27965 | 12 | connective tissue diseases | 347,784,291 | 52,511,397,108 | 4,375,949,759 |
| PRJNA398240 | 22 | Mycobacterium tuberculosis | 1,070,313,577 | 92,046,967,622 | 4,183,953,074 |
| PRJNA686397 | 271 | leprosy | 3,745,132,928 | 1,131,030,144,256 | 4,173,542,968 |
| PRJNA201433 | 25 | implant of left ventricular devices | 486,115,991 | 97,223,198,200 | 3,888,927,928 |
| PRJNA354367 | 24 | rheumatoid arthritis | 440,934,780 | 89,068,825,560 | 3,711,201,065 |
| PRJNA401870 | 670 | malaria infection | 23,803,919,884 | 2,427,999,828,168 | 3,623,880,341 |
| PRJNA315611 | 355 | Mycobacterium tuberculosis | 12,621,668,141 | 1,258,394,190,556 | 3,544,772,368 |
| PRJNA380820 | 40 | malaria | 1,385,805,539 | 141,352,164,978 | 3,533,804,124 |
| PRJNA494572 | 2 | Immune Rep | 17,746,758 | 6,958,474,116 | 3,479,237,058 |
| PRJNA526259 | 99 | Myalgic encephalomyelitis | 1,635,104,044 | 330,291,016,888 | 3,336,272,898 |
| PRJNA230906 | 6 | H7N9 infection | 104,404,498 | 18,945,387,393 | 3,157,564,566 |
| PRJNA232593 | 47 | globin depletion | 925,123,735 | 138,768,560,250 | 2,952,522,559 |
| PRJNA533086 | 1021 | Zika | 8,394,083,256 | 2,339,713,683,748 | 2,291,590,288 |
| PRJNA679331 | 147 | COVID-19 | 3,020,052,290 | 313,658,976,932 | 2,133,734,537 |
| PRJNA613909 | 20 | psoriasis | 747,490,987 | 38,122,040,337 | 1,906,102,017 |
| PRJNA607120 | 128 | metabolic syndrome | 1,211,648,818 | 182,913,643,573 | 1,429,012,840 |
| PRJNA693202 | 26 | Parkinson’s disease | 364,029,613 | 37,131,020,526 | 1,428,116,174 |
| PRJNA683803 | 211 | HIV-infected patients | 1,628,600,937 | 287,831,202,774 | 1,364,128,923 |
| PRJNA454445 | 612 | Circadian State | 4,466,128,161 | 371,064,549,144 | 606,314,623 |
| PRJNA459725 | 96 | pregnancy | 437,555,274 | 34,129,311,372 | 355,513,660 |
Projects are listed in order of bases per sample, with our current study the top listed.