Table 2. The list of QTLs for eight studied traits identified using 179 spring wheat accessions tested under irrigated and rainfed conditions of Northern Kazakhstan (2018, 2019 and 2020).

No	QTL name	SNP	Chr	Pos	P-value	Effect	Irrigated	Rainfed
1	QHD.ta.ipbb-1B	Kukri_c39223_871	1B	75.6	3.77E−04	4.84		+
2	QHD.ta.ipbb-2A	RAC875_c1706_1888	2A	151.2	3.33E−04	−1.61	+	+
3	QHD.ta.ipbb-2B	Excalibur_c20376_615	2B	76.8	6.54E−05	−1.42	+	+
4	QHD.ta.ipbb-3B	wsnp_Ex_c8240_13914674	3B	32.9	1.49E−06	2.06	+	+
5	QHD.ta.ipbb-5A.1	BobWhite_c10385_374	5A	0.00	1.57E−05	−5.68	+	+
6	QHD.ta.ipbb-5A.2	wsnp_BF293620A_Ta_2_1	5A	58.27	1.94E−05	−2.13	+	+
7	QHD.ta.ipbb-5A.3	BS00022071_51	5A	90.5	4.89E−05	−1.96	+	+
8	QHD.ta.ipbb-5B	RAC875_rep_c109634_90	5B	125.0	3.45E−04	−1.67		+
9	QHD.ta.ipbb-6A	Excalibur_c28854_1580	6A	0.88	1.94E−06	−6.89		+
10	QHD.ta.ipbb-6B	RAC875_c13610_1599	6B	0.37	3.76E−05	−5.39	+	+
11	QHD.ta.ipbb-6D	Excalibur_rep_c106566_371	6D	2.56	8.82E−06	−6.34		+
12	QSMD.ta.ipbb-2A	RAC875_c57998_165	2A	101.9	3.23E−04	−3.66	+
13	QSMD.ta.ipbb-2B.1	Kukri_c9785_1472	2B	75.7	3.74E−04	−0.31	+	+
14	QSMD.ta.ipbb-2B.2	CAP8_c5161_541	2B	107.5	2.07E−04	0.47		+
15	QSMD.ta.ipbb-2D	Excalibur_c23239_961	2D	129.0	1.58E−04	1.75	+
16	QSMD.ta.ipbb-3B.1	IMX3190	3B	56.6	5.05E−04	−1.40		+
17	QSMD.ta.ipbb-3B.2	BobWhite_c5095_634	3B	69.7	5.05E−04	−3.39		+
18	QSMD.ta.ipbb-3B.3	BS00078844_51	3B	85.0	5.00E−06	−6.32		+
19	QSMD.ta.ipbb-3D	GENE-1805_65	3D	71.9	6.63E−04	−3.39		+
20	QSMD.ta.ipbb-4A	RAC875_c40654_206	4A	120.1	1.76E−04	−1.28		+
21	QSMD.ta.ipbb-5D	Jagger_c8037_96	5D	167.0	6.62E−06	−5.35		+
22	QSMD.ta.ipbb-6A	BS00009985_51	6A	60.9	8.25E−05	−5.22		+
23	QSMD.ta.ipbb-6B	Excalibur_c15744_322	6B	0.37	8.66E−04	−3.36	+	+
24	QPL.ta.ipbb-3B.1	wsnp_Ra_c12935_20587578	3B	52.8	2.75E−04	−0.26	+	+
25	QPL.ta.ipbb-3B.2	BS00030534_51	3B	67.4	3.34E−04	4.76	+	+
26	QSL.ta.ipbb-1A	wsnp_Ku_c1818_3557408	1A	16.7	7.81E−04	−0.78	+	+
27	QSL.ta.ipbb-1B	wsnp_Ex_c26419_35667216	1B	65.4	5.99E−04	−0.95	+	+
28	QSL.ta.ipbb-2B	BS00093993_51	2B	108.3	5.64E−06	−1.09	+	+
29	QSL.ta.ipbb-2D	TA001453-0801	2D	96.1	3.11E−04	−0.62	+	+
30	QSL.ta.ipbb-5B	Excalibur_c9391_1016	5B	109.5	1.55E−04	−0.78	+	+
31	QNPS.ta.ipbb-1B	BS00078431_51	1B	70.8	7.91E−05	0.31	+
32	QNPS.ta.ipbb-1D	BS00063511_51	1D	167.1	8.34E−05	0.29	+
33	QNPS.ta.ipbb-2B	Excalibur_c20376_615	2B	76.8	1.12E−05	0.34	+
34	QNPS.ta.ipbb-5A	RAC875_rep_c112818_307	5A	98.9	3.40E−05	−0.29	+
35	QNPS.ta.ipbb-6A	TA003021-1057	6A	56.1	6.16E−04	0.02	+
36	QNPS.ta.ipbb-7A	TA003458-0086	7A	133.9	3.54E−05	0.17	+
37	QNKS.ta.ipbb-2B	Ku_c77612_301	2B	77.6	8.27E−05	−4.14	+	+
38	QNKS.ta.ipbb-3B	wsnp_Ex_c8240_13914674	3B	32.9	1.05E−06	5.13	+
39	QNKS.ta.ipbb-4B	RAC875_c5087_310	4B	71.3	3.28E−04	−5.10	+	+
40	QTKW.ta.ipbb-1B	BS00078431_51	1B	70.8	2.75E−06	3.49	+	+
41	QTKW.ta.ipbb-1D	BS00063511_51	1D	167.1	3.64E−05	2.84	+	+
42	QTKW.ta.ipbb-2A	wsnp_Ex_rep_c101866_87158671	2A	101.9	4.40E−04	2.27	+	+
43	QTKW.ta.ipbb-2B	Excalibur_c20376_615	2B	76.8	1.98E−06	3.49	+	+
44	QTKW.ta.ipbb-4B	Excalibur_c27349_166	4B	77.9	2.67E−04	−2.65	+	+
45	QTKW.ta.ipbb-5A	RAC875_rep_c112818_307	5A	98.9	2.23E−05	−3.02	+	+
46	QTKW.ta.ipbb-6A	TA003021-1057	6A	56.1	1.67E−06	−3.34	+	+
47	QTKW.ta.ipbb-7A	TA003458-0086	7A	133.9	4.56E−05	2.92	+
48	QTKW.ta.ipbb-7B	BS00063744_51	7B	99.2	2.83E−05	2.68		+
49	QYM2.ta.ipbb-3D	BS00061125_51	3D	149.8	3.10E−04	25.39	+
50	QYM2.ta.ipbb-7B	wsnp_Ex_c11003_17857759	7B	77.2	5.26E−04	20.88	+