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. 2021 Jul 20;17(7):e1009228. doi: 10.1371/journal.pcbi.1009228

Table 5. Rearranged PDAC tumor samples showing the continuously changing pattern of the signature profile.

Columns are sorted based on APOD rankings. Genes APOD and COL11A1 are highlighted in green and red, respectively.

Rank T2 T13 T14 T19 T3 T10 T15 T18 T7 T6 T12 T4 T24 T1 T5 T22 T11 T21 T23 T9 T16 T17 T8
1 LUM LUM DCN SFRP2 MMP2 PDGFRA SFRP2 DCN CYP1B1 COL10A1 MMP2 COL10A1 DCN SFRP2 PDGFRA COL1A2 LUM COL10A1 COL1A1 LUM LUM COL10A1 COL11A1
2 APOD APOD APOD APOD LUM HTRA3 LUM SFRP2 SFRP2 PDGFRA LUM SFRP2 LUM VCAN CYP1B1 PDGFRA DCN CTHRC1 COL1A2 DCN DCN CTHRC1 COL10A1
3 VCAN DCN LUM LUM APOD DPT DCN LUM COL8A1 SFRP2 PDGFRA COL1A1 FBLN1 LUM SFRP2 THBS2 CTHRC1 THBS2 COL3A1 RARRES2 COL1A1 COL11A1 CREB3L1
4 SFRP4 FBLN1 SFRP4 IGF1 DCN APOD VCAN C3 PDGFRA CYP1B1 CTHRC1 MMP2 VCAN PDGFRA SFRP4 MMP2 SFRP2 GJB2 COL6A3 CTHRC1 COL1A2 ISLR RP11-400N13.3
5 SFRP2 MMP2 TSHZ2 EFEMP1 FBLN1 MEG3 APOD MMP2 COL10A1 MMP2 ITGBL1 LUM SFRP4 COL1A2 DPT COL1A1 COL10A1 SFRP2 LUM SFRP2 COL6A3 MMP2 SFRP2
6 MMP2 SFRP4 HTRA3 PDGFRA VCAN OMD FBLN1 APOD SFRP4 VCAN EFEMP1 COL1A2 COL1A2 EFEMP1 LUM COL3A1 RARRES2 COL11A1 FN1 AEBP1 COL3A1 COL1A1 BASP1
7 RARRES1 SFRP2 FBLN1 OGN FBLN5 ITGBL1 MMP2 EFEMP1 CTHRC1 CTHRC1 SFRP2 CTHRC1 MMP2 DCN MEG3 ITGBL1 AEBP1 CCDC80 COL5A2 COL10A1 VCAN COL1A2 PDPN
8 C3 RARRES1 MMP2 SFRP4 PDGFRA PAPPA COL6A3 MFAP4 APOD LUM FBLN5 DCN SFRP2 CCDC80 EFEMP1 COL10A1 NBL1 NBL1 VCAN NBL1 SFRP2 COL3A1 BNC2
9 MEG3 VCAN COL6A3 VCAN SFRP2 MRC2 COL1A1 FBLN1 MMP2 SFRP4 VCAN CTSK C1R ISLR VCAN CTHRC1 CTSK DCN COL5A1 MMP2 MEG3 AEBP1 C5orf46
10 HTRA3 HTRA3 VCAN CTSK C3 LSAMP COL1A2 SFRP4 PLXDC2 APOD APOD MFAP2 C1S SFRP4 IGF1 LUM VCAN AEBP1 THBS2 CTSK CTHRC1 MMP11 PLXDC2
11 FBLN1 ISLR GPC3 COL1A2 MGP CYP1B1 ISLR CCDC80 VCAN PLXDC2 COL8A1 APOD APOD COL6A3 FBLN5 SFRP2 CTGF INHBA SFRP2 THBS2 EFEMP1 THBS2 SPOCK1
12 MGP COL6A3 CTGF STEAP1 EFEMP1 COL10A1 COL10A1 RARRES1 BNC2 COL8A1 STEAP1 MATN3 CTSK CYP1B1 SERPINE2 EFEMP1 COL8A1 LUM CTHRC1 FBLN1 PDGFRA COL12A1 ADM
13 DCN SPON2 SFRP2 MMP2 OMD COL8A1 CTHRC1 C1S MRC2 FBLN1 COL1A2 MEG3 CCDC80 COL1A1 FBLN1 MRC2 THBS2 FBLN1 MMP2 VCAN FBLN2 HTRA1 MMP2
14 CYP1B1 CYP1B1 C1S CYP1B1 RP11-572C15.6 PDPN CCDC80 VCAN DPYSL3 OMD PTGDS ISLR ISLR APOD SCN7A COL6A3 MMP2 MMP2 COL10A1 CCDC80 LOX MMP14 ARL4C
15 COL1A2 LXN OMD PTGDS CCDC80 CXCL14 SFRP4 PTGDS COL1A2 THBS2 ISLR FBLN1 C3 CLDN11 LTBP2 PDPN COL11A1 COL6A3 COL11A1 COL1A1 COL5A1 SFRP2 MEG3
16 MOXD1 SERPINF1 SPON2 FBLN1 IGF1 MMP23B CTSK C1R FBLN5 FAP LXN COL11A1 EFEMP1 CTSK APOD VCAN INHBA OMD AEBP1 S100A6 COL8A1 SULF1 GJA1
17 PTGDS CTHRC1 C3 RARRES1 TSHZ2 ABCA9 COL3A1 CTSK CREB3L1 MFAP2 OLFML3 COL3A1 MGP FBLN1 PTGDS DPYSL3 C1QTNF3 MEG3 COL12A1 COL8A1 LXN LUM VCAN
18 FBLN5 CTSK F2R DCN ITM2A LUM S100A10 PDGFRA COL3A1 COL6A3 THBS2 SFRP4 TSHZ2 MMP2 ISLR LOX SFRP4 COL8A1 DCN TMSB10 MMP2 SDC1 FIBIN
19 PDGFRA F2R ANKH COL3A1 SFRP4 PDGFRL THBS2 SERPINF1 OMD RARRES1 FBLN1 CXCL14 PDGFRA COL3A1 PODN GJA1 MATN3 ISLR SPARC C1S S100A10 DCN COL1A2
20 COL6A3 FBLN5 CTSK MFAP5 RARRES1 STXBP6 HTRA1 MOXD1 RARRES1 EFEMP1 MGST1 ITGBL1 OMD PTGDS DCN APOD HTRA1 MMP11 TMSB10 COL1A2 FBLN1 MFAP5 ZFHX4
21 CTHRC1 COL1A2 C1R FBLN5 COL8A1 SVEP1 SEMA3C GPNMB PODN COL1A2 MEG3 COL6A3 FBLN5 FBLN2 MMP2 FAP ITGBL1 MFAP5 MMP14 COL3A1 ISLR VCAN MFAP2
22 FAP C7 IGFBP3 COL1A1 OGN BICC1 FBLN2 RARRES2 LSAMP ANKH PDPN VCAN COL1A1 CTHRC1 MGP MXRA5 MFAP5 PPAPDC1A SDC1 HTRA1 FAP COL6A3 MME
23 F2R TMEM119 MOXD1 ISLR C7 ABCA6 LRP1 FBLN5 THBS2 FNDC1 MFAP2 IGFL2 OGN C3 C7 PODN CXCL14 CTSK POSTN CD99 PPIC GJB2 MFAP5
24 ISLR EFEMP1 CTHRC1 C3 DPT MFAP2 MRC2 ISLR SVEP1 SPON2 DPT RARRES2 SERPINF1 PLXDC2 MGST1 CXCL14 GJB2 MXRA5 FBLN1 ISLR CYP1B1 GREM1 RAB3B
25 TIMP1 MOXD1 MEG3 MEG3 BICC1 BNC2 PDPN ITGBL1 ITGBL1 PDPN C3 FNDC1 CTGF RARRES1 SPOCK1 COL8A1 IGFBP3 FNDC1 INHBA SERPINF1 CREB3L1 TIMP2 ITGBL1
26 C7 CCDC80 PDGFRA CTHRC1 CTHRC1 WNT5A MXRA5 COL10A1 PTGDS CTSK MRC2 COL5A1 FBLN2 RP11-572C15.6 CCDC80 SFRP4 CCDC80 COL1A1 SERPINH1 TSC22D3 CCDC80 COL5A2 GJB2
27 PHLDA3 COL1A1 FBLN5 MOXD1 PODN CST3 OMD CYP1B1 FAP MFAP5 PTGIS OMD COL6A3 THBS2 SLC19A2 SEMA3C CD99 SDC1 MXRA5 FTL MRC2 FAP COL3A1
28 OMD PLXDC2 ITM2A COL6A3 COL6A3 SFRP2 ITGBL1 C7 LUM HTRA3 MOXD1 CST4 PODN C7 HTRA3 LRP1 C1S VCAN HTRA1 MFAP2 MFAP5 MFAP2 NTM
29 FBLN2 PDGFRA COL1A2 MGP CXCL14 MOXD1 RARRES2 PLXDC2 FBLN1 LRP1 HSD11B1 INHBA LTBP2 LAMA2 MOXD1 NTM LOXL1 GREM1 MMP11 ANXA2 THBS2 CTSK PDLIM4
30 SCN7A C3 PTGDS C7 COL1A2 ZFHX4 FBN1 CTHRC1 SULF1 COL1A1 SFRP4 GJB2 ITGBL1 OLFML3 ITGBL1 C3 FIBIN PDPN ISLR LAPTM4A CTSK COL5A1 CMTM8
31 EFEMP1 COL10A1 RARRES1 CILP ISLR RARRES1 PLXDC2 DPT INHBA DIO2 LSAMP IGFBP3 C7 MFAP4 CTSK COL11A1 FBLN1 FBLN2 MEG3 NNMT MXRA5 PPAPDC1A TANC2
32 COL10A1 C1S OLFML3 COL8A1 MEG3 BOC CXCL14 CLU SEMA3C DCN PLXDC2 HTRA3 PLXDC2 SLIT2 FBLN2 UNC5B PALLD MFAP2 TIMP2 C1R OGN FN1 NT5E
33 SERPINF1 PODN OGN THBS2 CTSK PODN PDGFRA NPC2 LOX ALDH1A3 MFAP4 CST1 MOXD1 IGF1 CTHRC1 LOXL1 SDC1 C1QTNF3 FSTL1 RPL27A RARRES2 TMEM158 TENM3
34 BNC2 LTBP2 ITGBL1 MRC2 HSD11B1 TMEM119 MATN3 MEG3 PDPN LOX OGN FBLN2 TMEM119 LRP1 SVEP1 COL5A2 MFAP2 COL5A2 COL6A2 INHBA FSTL1 POSTN EPDR1
35 CTSK NPC2 PTCH1 NR2F1 CTGF PTGIS COL8A1 RP11-572C15.6 IGF1 FBLN2 COL6A3 MFAP5 COL8A1 PDLIM3 MXRA5 SCARA3 ANXA2 CDH11 CTSK NUPR1 COL5A2 ANTXR1 MYH10
36 MRC2 HSD11B1 COL8A1 ITGBL1 C1S OGN NBL1 MGP LAMP5 OLFML3 SPON2 MXRA5 LRP1 LTBP2 STEAP1 COL8A2 APOD LOX MFAP2 LGALS1 LRP1 PLAU LOX
37 TSHZ2 MGP BOC TSHZ2 COL10A1 FAP TMEM119 COL6A3 FBLN2 TMEM119 COL1A1 THBS2 RARRES1 FBLN5 NEGR1 PTGDS OMD COL3A1 MFAP5 COL6A3 RARRES1 INHBA COL8A1
38 LRP1 DPT SERPINF1 STEAP2 SERPINE2 EFEMP1 HTRA3 LTBP2 OGN MEG3 LTBP2 CTGF BOC MGP C3 CCDC80 ISLR PDGFRA GAS1 COL11A1 FBLN5 GJA1 EVA1A
39 SLIT2 COL3A1 MGP MFAP2 SERPINF1 LAMA2 FAP AEBP1 PTGFRN FGF7 PODN MRC2 CYBRD1 MEG3 RARRES1 ALDH1A3 SLC6A6 F13A1 LRRC15 OMD FBN1 LGALS1 MXRA5
40 COL1A1 OMD IGFBP6 PDGFRL LTBP2 GSTM5 MEG3 PDPN GAS7 TMSB10 DCN GJA1 LXN BICC1 RP11-572C15.6 FGFR1 CYR61 FRMD6 COL8A2 CD55 GAS1 PTK7 BICC1
41 SVEP1 MFAP4 TIMP1 PDPN NEGR1 IGF1 FNDC1 COL1A1 CXCL14 CXCL14 CTSK FAP LOX MRC2 PLXDC2 BOC COL1A2 APOD FBLN2 PDPN BNC2 CD99 C1orf198
42 THBS2 TSHZ2 MFAP4 PLXDC2 MOXD1 F2R NTM COL8A1 COL11A1 ITGBL1 SPOCK1 SPON2 HTRA3 FGFR1 LRP1 PLXDC2 MMP11 COL1A2 GREM1 LOXL1 PLOD2 NBL1 INHBA
43 TMEM119 COL8A1 CLEC11A OMD C1R F3 DPYSL3 S100A13 FNDC1 IGFBP3 COL3A1 BICC1 RP11-572C15.6 ABL2 ABI3BP MFAP2 MEG3 DIO2 APOD FIBIN PDPN NTM PDGFC
44 IGFBP3 STEAP1 INHBA MMP23B FGF7 MMP2 SLC6A6 OGN HTRA3 CDH11 RARRES1 EMP1 CYP1B1 MXRA5 FAP MFAP5 PLXDC2 CD55 COL8A1 NTM MMP23B RARRES2 FBLN2
45 C1S PTGDS MXRA8 LXN COL1A1 SFRP4 CYP1B1 MMP23B MOXD1 IGF1 SVEP1 FGF7 CTHRC1 RGS2 COL6A3 TMSB10 FBLN2 HTRA1 CD99 S100A10 LTBP2 FBLN1 B4GALT1