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. 2021 Jul 31;22:582. doi: 10.1186/s12864-021-07892-9

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© The Author(s) 2021

Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

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Fig. 2 — Output of InvertypeR. The locations of HOM (open lollipops) and phased HET inversions (closed lollipops) are shown for each individual of one of the HGSVC trios (of Puerto Rican descent; see [3]): A HG00731, B HG00732, and C HG00733. In the related Supplemental Figs. (S2-S10, Additional files 2, 3, 4, 5, 6, 7, 8, 9 and 10), clicking any lollipop links to Strand-seq data and other pertinent features displayed in the UCSC Genome Browser [20]. The sizes of inversions larger than 50 Kb are indicated with black bars. Inversion coordinates are from a combination of the de novo and public callsets (below)