Table 1.
Molecular docking for ACE2 protecting peptides
Peptide sequences | Docking protein | dG_cross | dSASA_int | sc_value | I_sc | |
---|---|---|---|---|---|---|
AYp28 | KKKKKKVEGFNCYFPLQS | ACE2 | -34.4496 | 1531.23655 | 0.56795 | -33.70445 |
AYp26 | KKKKKKYKYRYLRHGKLR | ACE2 | -32.54045 | 1507.7399 | 0.5771 | -31.19635 |
AYp7 | DDDDDDYLYRLF | ACE2 | -32.4877 | 1193.2851 | 0.65285 | -31.74535 |
AYp5 | KKKKKKYLYRLF | ACE2 | -32.40755 | 1338.0122 | 0.607 | -30.8578 |
AYp27 | VEGFNCYFPLQS | ACE2 | -31.5179 | 1121.02775 | 0.65705 | -32.3374 |
AYp24 | KKKKKKYLYRLFRKSNLK | ACE2 | -31.07315 | 1419.467 | 0.6084 | -29.8306 |
AYp8 | KKKKKKYKYRLF | ACE2 | -29.72035 | 1286.8167 | 0.61665 | -28.97565 |
AYp19 | DDDDDDYKYRYL | ACE2 | -29.18715 | 1194.00725 | 0.59665 | -29.30365 |
AYp21 | RRRRRRYKYRYL | ACE2 | -28.97495 | 1373.1271 | 0.59535 | -29.22065 |
AYp10 | KKKKKKRLFRKS | ACE2 | -28.70975 | 1287.17935 | 0.61905 | -28.1619 |
AYp18 | KKKRRRYKYRYL | ACE2 | -28.53455 | 1343.1097 | 0.60045 | -28.51735 |
AYp22 | HHHYKYRYL | ACE2 | -27.98075 | 1258.0382 | 0.66075 | -28.19665 |
AYp4 | KKKYLYRLF | ACE2 | -27.1139 | 1002.9328 | 0.67 | -26.63285 |
AYp17 | KKKKKKYKYRYL | ACE2 | -26.4989 | 1268.80585 | 0.59355 | -26.3129 |
AYp20 | RRRYKYRYL | ACE2 | -25.6448 | 1012.5298 | 0.65965 | -25.30435 |
AYp25 | YKYRYLRHGKLR | ACE2 | -25.5586 | 1121.8961 | 0.65115 | -25.36815 |
AYp16 | KKKYKYRYL | ACE2 | -25.5087 | 1046.48955 | 0.64195 | -25.20135 |
AYp23 | YLYRLFRKSNLK | ACE2 | -24.96605 | 1137.3647 | 0.633 | -25.1026 |
AYp3 | YLYRLF | ACE2 | -21.6518 | 760.0564 | 0.7118 | -21.45285 |
AYp15 | YKYRYL | ACE2 | -20.5782 | 749.1877 | 0.71115 | -20.7058 |
AYp9 | RLFRKS | ACE2 | -17.67025 | 535.34135 | 0.70165 | -16.7909 |
Solvent-accessible surface area buried at the interface in square angstroms (dSASA_int);
Binding energy of the interface calculated with cross-interface energy terms (dG_cross);
Interface score (I_sc, sum over energy contributed by interface residues of both parteners);
Shape complementarity score (sc_value, range 0~1)