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. 2021 Jul 19;12:659507. doi: 10.3389/fgene.2021.659507

TABLE 2.

Candidate regions detected by at least two approaches of selection signature analysis in the SD_G1 (AL) sheep group.

Reg Oar Start Stop Size (Mb) Method Compression No. of genes Genes
1 1 222482061 222559568 0.078 ROH XP-EHH _ SD_G2 –
2 25525099 25681293 0.156 ROH _ FST SD_G2 4 TTC39A, EPS15, LOC105609505, LOC105609934
3 252663891 252805582 0.142 ROH _ FST SD_G2 2 KY, LOC105604327
4 25525099 25681293 0.156 ROH XP-EHH _ CN_G2 2 TTC39A, EPS15
5 106050370 106283918 0.234 ROH _ FST CN_G1 2 ENSOARG00000006782, ENSOARG00000006800
6 68580173 68776536 0.196 ROH _ FST CN_G2 5 BTBD8, U6, C1orf146, GLMN, RPAP2
7 2 9128447 9157161 0.029 ROH XP-EHH _ CN_G1 1 ATP6V1G1
8 182815842 182824846 0.009 ROH XP-EHH _ CN_G1 –
9 14616917 14797915 0.181 ROH XP-EHH _ CN_G2 1 U6
10 3 10700001 11800000 1.099 ROH XP-EHH _ CN_G1, CN_G2 19 HSPA5, RABEPK, PPP6C, SCAI, ENSOARG00000025028, GOLGA1, ARPC5L, ENSOARG00000013275, WDR38, U6, OLFML2A, ENSOARG00000023155, oar-mir-181a-2, NR6A1, NR5A1, ADGRD2, PSMB7, NEK6, LHX2
11 131800001 132600000 0.799 ROH XP-EHH _ SD_G2 19 PPP1R1A, PDE1B, NCKAP1L, GTSF1, ITGA5, ZNF385A, COPZ1, NFE2, CBX5, HOXC4, HOXC5, HOXC6, HOXC8, HOXC9, HOXC10, HOXC11, HOXC12, HOXC13, STAB2
12 12404574 12497707 0.093 ROH XP-EHH _ CN_G1, CN_G2 1 U6
13 206745061 206865854 0.121 ROH XP-EHH _ CN_G1 4 LOC105614286, LOC105608615, LOC105608603, LOC105614853
14 135904027 135905257 0.001 ROH XP-EHH _ CN_G2 1 LIMA1
15 135983081 135983081 0.000 ROH XP-EHH _ CN_G2 1 CERS5
16 153813836 153863913 0.050 ROH _ FST CN_G1 3 ENSOARG00000002929, ENSOARG00000023603, LOC105609946
17 185666225 185873353 0.207 ROH _ FST CN_G1 –
18 5 107400001 108000000 0.599 _ _ FST SD_G2, CN_G1 5 ENSOARG00000000146, CAMK4, STARD4, ENSOARG00000010495, WDR36, ENSOARG00000025339, ENSOARG00000025340, ENSOARG00000025340
19 41700001 42000000 0.299 _ XP-EHH _ CN_G2 11 ENSOARG00000013233, ENSOARG00000013103, SOWAHA, SHROOM1, GDF9, UQCRQ, LEAP2, AFF4, U6, ZCCHC10, ENSOARG00000013524
20 49700001 50000000 0.299 _ XP-EHH _ CN_G2 10 PCDHB14, PCDHB15, ENSOARG00000014442, TAF7, PCDHGA1, PCDHGA2, ENSOARG00000000218, PCDHGC3, ENSOARG00000023940, DIAPH1
21 48997231 49137648 0.140 ROH XP-EHH _ CN_G2 9 LOC101121602, 5S_rRNA, U6, SRA1, APBB3, LOC105615270, AO21, AO45, SLC35A4, ENSOARG00000018230
22 49139142 49171418 0.032 ROH XP-EHH _ CN_G2 5 ENSOARG00000018230, CD14, TMCO6, NDUFA2, IK
23 49589412 49704569 0.115 ROH XP-EHH _ CN_G2 5 PCDHB6, PCDHB7, LOC101103233, LOC101102062, PCDHB14
24 6 69896247 70000135 0.104 ROH XP-EHH FST SD_G2 2 LOC105613062, LOC105613064
25 85447324 85695088 0.248 ROH XP-EHH FST SD_G2, CN_G1, CN_G2 6 ENSOARG00000011228, ENSOARG00000008596, AMTN, AMBN, ENAM, JCHAIN
26 116051931 116125336 0.073 ROH _ FST SD_G2 4 NSD2, LETM1, FGFR3, ENSOARG00000015218
27 69700001 70000000 0.300 ROH XP-EHH FST SD_G2, CN_G2 2 PDGFRA, ENSOARG00000021645
28 73500001 73900000 0.400 _ XP-EHH FST SD_G2 2 LOC101118699, TRNAC-GCA
29 83200001 83600000 0.400 _ XP-EHH FST SD_G2 7 CENPC, STAP1, UBA6, GNRHR, ENSOARG00000007652, TMPRSS11D, TMPRSS11A
30 69896247 70000135 0.104 ROH _ FST CN_G2 2 LOC105613062, LOC105613064
31 8 27957061 28318981 0.362 ROH XP-EHH _ CN_G1 8 ENSOARG00000010506, ENSOARG00000010556, ENSOARG00000010591, CEP57L1, SESN1, 5S_rRNA, U12, ARMC2
32 10 71700001 72100000 0.400 _ XP-EHH FST SD_G2 5 LOC101109370, LOC101109105, LOC105616210, LOC101107612, LOC101109626
33 36524922 36651187 0.126 ROH XP-EHH _ CN_G2 4 MPHOSPH8, PARP4, ENSOARG00000024226, U6
34 70812659 70863686 0.051 ROH _ FST CN_G1, CN_G2 2 ENSOARG00000001156, ENSOARG00000001163
35 11 24600001 24800000 0.200 ROH _ FST CN_G1 7 SPNS2, MYBBP1A, GGT6, TEKT1, SMTNL2, FBXO39, XAF1
36 13 56200001 56600000 0.399 _ _ FST SD_G1, CN_G1 3 PHACTR3, ENSOARG00000015902, ZNF831
37 42500001 42800000 0.300 ROH _ FST CN_G1 8 LOC101109370, LOC101109105, LOC105616210, LOC101107612, LOC101109626, LOC101109633, LOC101109111, LOC101109377
38 14 34400001 34600000 0.200 ROH XP-EHH FST CN_G2 10 ATP6V0D1, AGRP, RIPOR1, CTCF, CARMIL2, ACD, PARD6A, ENKD1, C16orf86, GFOD2
39 38400001 38600000 1.999 ROH XP-EHH _ CN_G1 6 PKD1L3, IST1, U6, ZNF821, ATXN1L, AP1G1
40 15 42448209 42461989 0.014 ROH _ FST CN_G2 1 SBF2
41 17 34524230 34545454 0.021 ROH XP-EHH FST SD_G2 1 FGF2
42 34400001 34700000 0.300 _ XP-EHH FST SD_G2 5 FGF2, ENSOARG00000023095, NUDT6, U4, LOC101104012
43 34524230 34545454 0.021 ROH XP-EHH _ CN_G2 1 FGF2
44 18 17316593 17437561 0.121 ROH XP-EHH _ CN_G1, CN_G2 1 LOC105603074
45 23475785 23580801 0.105 ROH _ FST SD_G2, CN_G2 1 EFL1 (EFTUD1)
46 21 36959560 37178672 0.219 ROH _ FST CN_G2 6 PAG11, LOC105604177, LOC101123081, PAG3, LOC105604087, LOC105604088
47 26 1506153 1925293 0.419 ROH XP-EHH _ CN_G1, CN_G2 1 CSMD1
48 1344691 1394564 0.050 ROH XP-EHH _ CN_G2 1 ENSOARG00000026782

Reg = candidate region; Oar = ovine chromosome.