Skip to main content
. 2021 Jul 19;12:659507. doi: 10.3389/fgene.2021.659507

TABLE 3.

Candidate regions detected by at least two approaches of selection signature analysis in the SD_G2 sheep group.

Reg Oar Start Stop Size (Mb) Method Compression No. of genes Genes
1 1 102680214 102786943 0.107 ROH XP-EHH _ SD_G1 3 NPR1, INTS3, SLC27A3
2 105567842 105641892 0.074 ROH _ FST CN_G1 3 ENSOARG00000022142, ENSOARG00000006704, ETV3
3 129000001 129200000 0.200 _ XP_EHH FST CN_G1 3 MRPL39, MIR155, U6
4 255100001 255300000 0.200 _ XP_EHH FST CN_G1 4 ACAD11, ACKR4, DNAJC13, ENSOARG00000009070
5 2 184000001 184500000 0.500 _ XP_EHH FST CN_G1 5 PTPN4, EPB41L5, U4, TMEM185B, RALB
6 3 10700001 11800000 1.099 ROH XP-EHH _ CN_G1, CN_G2 19 HSPA5, RABEPK, PPP6C, SCAI, ENSOARG00000025028, GOLGA1, ARPC5L, ENSOARG00000013275, WDR38, U6, OLFML2A, ENSOARG00000023155, oar-mir-181a-2, NR6A1, NR5A1, ADGRD2, PSMB7, NEK6, LHX2
7 192700001 193100000 0.400 _ XP-EHH FST SD_G1 5 ST8SIA1, ENSOARG00000023574, LOC101115359, CMAS, ABCC9
8 11763552 11825668 0.062 ROH XP_EHH _ CN_G1, CN_G2 2 DENND1, ENSOARG00000013754
9 10512650 10583705 0.071 ROH XP_EHH _ CN_G2 2 MAPKAP1, U5
10 107100001 107300000 0.200 _ XP_EHH FST CN_G1 1 TSPAN8
11 129700001 129900000 0.200 _ XP_EHH FST CN_G1, CN_G2 2 SOCS2, CRADD
12 4 94273495 94445213 0.172 ROH XP-EHH _ SD_G1 10 ENSOARG00000022095, ENSOARG00000021327, ENSOARG00000022560, MEST, MIR335, COPG2, ENSOARG00000025252, ENSOARG00000025253, ENSOARG00000025253, TSGA13
13 87332113 87348849 0.017 ROH _ FST SD_G1 –
14 48500001 48800000 0.300 _ XP_EHH FST CN_G1 8 COG5, GPR22, DUS4L, ENSOARG00000005784, ENSOARG00000024106, SLC26A4, CBLL1, SLC26A3
15 5 41700001 42000000 0.299 _ XP-EHH _ CN_G2 11 ENSOARG00000013233, ENSOARG00000013103, SOWAHA, SHROOM1, GDF9, UQCRQ, LEAP2, AFF4, U6, ZCCHC10, ENSOARG00000013524
16 49700001 50000000 0.299 _ XP-EHH _ CN_G2 10 PCDHB14, PCDHB15, ENSOARG00000014442, TAF7, PCDHGA1, PCDHGA2, ENSOARG00000000218, PCDHGC3, ENSOARG00000023940, DIAPH1
17 107463423 107559150 0.096 ROH _ FST SD_G1 2 CAMK4, ENSOARG00000025339
18 28500001 28900000 0.400 _ XP-EHH FST SD_G1 1 SNCAIP
19 74969987 75083385 0.113 ROH XP_EHH _ CN_G1 1 LOC105606744
20 49868921 49929170 0.060 ROH XP_EHH _ CN_G2 2 LOC101105495, LOC101104318
21 6 24953079 24968246 0.015 ROH XP_EHH _ CN_G2 1 LOC105615434
22 7 55764564 55901243 0.137 ROH XP_EHH _ CN_G1 1 DMXL2
23 34293259 34382138 0.089 ROH XP_EHH _ CN_G2 2 SPTBN5, EHD4
24 8 90416289 90680086 0.264 ROH _ FST SD_G1, CN_G1, CN_G2 8 ENSOARG00000005108, FAM120B, PSMB1, ENSOARG00000005142, PDCD2, ENSOARG00000027055, ENSOARG00000027056, ENSOARG00000027057
25 10 50000001 50400000 0.400 _ XP-EHH FST SD_G1 –
26 78200001 78500000 0.300 _ XP-EHH FST SD_G1 7 TPP2, METTL21C, ENSOARG00000005160, TEX30, POGLUT2 (KDELC1), ERCC5, LOC101114712
27 7300001 7600000 0.300 _ XP_EHH FST CN_G2 2 ENSOARG00000006632, ENSOARG00000006641
28 11 51283288 51361005 0.078 ROH _ FST CN_G2 1 RNF213
29 12 69500001 70100000 0.600 _ XP-EHH FST SD_G1 7 DTL, INTS7, LPGAT1, ENSOARG00000022944, NEK2, ENSOARG00000004286, SLC30A1
30 61370423 61387625 0.017 ROH XP_EHH _ CN_G1 –
31 13 56326781 56522417 0.196 ROH XP-EHH FST SD_G1 2 ENSOARG00000015902, ZNF831
32 46300001 46700000 0.400 _ XP-EHH FST SD_G1 6 RASSF2, SLC23A2, TMEM230, PCNA, CDS2, ENSOARG00000022618
33 55900001 56400000 0.500 _ XP-EHH FST SD_G1 6 FAM217B, PPP1R3D, SYCP2, PHACTR3, ENSOARG00000021945, ENSOARG00000015902
34 56400001 56700000 0.300 _ XP-EHH FST SD_G1 7 ENSOARG00000015902, ZNF831, ZNF831, PRELID3B, ATP5F1E, TUBB1, CTSZ
35 33415419 33514937 0.100 ROH XP_EHH _ CN_G2 1 ZNF438
36 14 34400001 34600000 0.200 ROH XP-EHH _ CN_G2 10 ATP6V0D1, AGRP, RIPOR1, CTCF, CARMIL2, ACD, PARD6A, ENKD1, C16orf86, GFOD2
37 38400001 38600000 1.999 ROH XP-EHH _ CN_G1 6 PKD1L3, IST1, U6, ZNF821, ATXN1L, AP1G1
38 16 70528271 70733910 0.206 ROH _ FST CN_G1 8 ENSOARG00000026989, ENSOARG00000015678, ENSOARG00000015729, ENSOARG00000015756, 5S_rRNA, EXOC3, ENSOARG00000026990, SLC9A3
39 18 19336673 19349659 0.013 ROH _ FST CN_G2 1 LOC101122139
40 19 31400001 31700000 0.300 _ XP-EHH FST SD_G1 2 ENSOARG00000009783, MITF
41 37200001 37700000 0.500 _ XP-EHH FST SD_G1 6 PRICKLE2, PSMD6, ATXN7, THOC7, C3orf49, ENSOARG00000011488
42 48100001 48400000 0.300 _ XP-EHH FST SD_G1 15 NEK4, ENSOARG00000024525, SPCS1, GLT8D1, GNL3, SNORD69, SNORD19C, SNORD19B, SNORD19, PBRM1, PBRM1, SMIM4, NT5DC2, STAB1, NISCH
43 47900001 48100000 0.200 _ XP_EHH FST CN_G2 6 SFMBT1, ENSOARG00000000541, ENSOARG00000000606, ITIH4, ITIH3, ITIH1
44 20 16646531 16720282 0.074 ROH XP-EHH FST SD_G1 7 PTCRA, CNPY3, GNMT, PEX6, PPP2R5D, MEA1, KLHDC3
45 21 46517968 46631317 0.113 ROH _ FST SD_G1 1 ANO1
46 38518624 38519133 0.001 ROH _ FST CN_G2 1 ENSOARG00000026107
47 25 39166409 39205820 0.039 ROH XP_EHH _ CN_G1 1 ENSOARG00000000408 (LOC101114083)

Reg = candidate region; Oar = ovine chromosome.