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. 2021 Jul 19;12:703421. doi: 10.3389/fmicb.2021.703421

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Copyright © 2021 Gresse, Chaucheyras-Durand, Garrido, Denis, Jiménez-Marín, Beaumont, Van de Wiele, Forano and Blanquet-Diot.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Differentially abundant genera between the samples of the recovery period containing the ETEC Ec105 strain or not in the bioreactor medium (A) and mucin beads (B) of the MPigut-IVM. Only significant Log2 fold changes are represented on the figure. Positive Log2 fold changes indicate genera that were significantly more abundant in the presence of the pathogen. P values were corrected for multiple testing.